View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_high_38 (Length: 275)
Name: NF8251_high_38
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 6855259 - 6855520
Alignment:
| Q |
1 |
ccccccttatgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaagcttcccatcaagggttttgacaac |
100 |
Q |
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| T |
6855259 |
ccccccttatgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaagcttcccatcgagggttttgacaac |
6855358 |
T |
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| Q |
101 |
ccggactgtatataactacatttccaccatacttattcccaccaacatgaaaacaagcattaacaatatcttatttttcaggccacgaagcgcaatttgc |
200 |
Q |
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| T |
6855359 |
ccggactgtatataactacatttccaccatacttattcccaccaacatgaaaacaagcattaacaatatattatttttcaggccacgaagcgcaatttgc |
6855458 |
T |
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| Q |
201 |
aaagttcnnnnnnntctatttatccacagagaaatatcatcactaaaaataaggaagaataa |
262 |
Q |
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| T |
6855459 |
aaagttcaaaaaaatctatttatccacagagaaatatcatcactaaaaataaggaagaataa |
6855520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 24242532 - 24242462
Alignment:
| Q |
10 |
tgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtc-ggtaaacaagctt |
79 |
Q |
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|||| |||||||||| ||||| |||||| |||||||||||||||||| | |||||| | ||||||||||| |
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| T |
24242532 |
tgaatcctctttccagtaacagggcatttaggtccactagctctcttcttggttgtctgataaacaagctt |
24242462 |
T |
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