View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8251_high_42 (Length: 265)

Name: NF8251_high_42
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8251_high_42
NF8251_high_42
[»] chr7 (2 HSPs)
chr7 (215-265)||(6951873-6951923)
chr7 (215-265)||(12332812-12332862)
[»] chr5 (2 HSPs)
chr5 (215-265)||(12594197-12594247)
chr5 (217-265)||(39507974-39508022)
[»] chr4 (1 HSPs)
chr4 (215-265)||(18186166-18186216)
[»] chr3 (1 HSPs)
chr3 (215-265)||(13242713-13242763)


Alignment Details
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 6951873 - 6951923
Alignment:
Q  215 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6951873 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatc 6951923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 12332862 - 12332812
Alignment:
Q  215 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12332862 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatc 12332812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 12594197 - 12594247
Alignment:
Q  215 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12594197 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatc 12594247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 39507974 - 39508022
Alignment:
Q  217 taataatttgaaaatttcaattcaaatcgactaagaattaataagaatc 265  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39507974 taataatttgaaaatttcaattcaaatcgactaaaaattaataagaatc 39508022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 18186216 - 18186166
Alignment:
Q  215 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186216 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatc 18186166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 13242713 - 13242763
Alignment:
Q  215 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242713 tctaataatttgaaaatttcaattcaaatcgactaagaattaataagaatc 13242763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University