View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_high_49 (Length: 244)
Name: NF8251_high_49
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 46 - 235
Target Start/End: Complemental strand, 14241825 - 14241633
Alignment:
| Q |
46 |
ttcaatgttgttgtattacagaatgatgcacctactgggatagcctatacttcacaaaatcaatctgtggcagcagaaaaagcagcattttatcattgtg |
145 |
Q |
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| T |
14241825 |
ttcaatgtttttgtattacagaatgatgcacctactgggatagcctatacttcacaaaatcaatatgtggcagcagaaaaagcagcattttatcattgtg |
14241726 |
T |
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| Q |
146 |
cattttatagttcacacaacacgctctttgattacaaaggaagacattactacgagtct---tgttacattcaaggttccattgatttcatat |
235 |
Q |
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| T |
14241725 |
cattttatagttcacacaacacgctctttgattacaaaggaagacattactacgagtcttgttgttacattcaaggttccattgatttcatat |
14241633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 12957147 - 12957346
Alignment:
| Q |
48 |
caatgttgttgtattacagaatgatgcacctactgggatagcctatacttcacaaaatcaatctgtg------------gcagcagaaaaagcagcattt |
135 |
Q |
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| T |
12957147 |
caatgttgttgcattatagaatgatgcacctacaggagttgcctatacttcacaaaatcaatctgtggcagcatttgtggcagcagagaaagctgcattt |
12957246 |
T |
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| Q |
136 |
tatcattgtgcattttatagttcacacaacacgctctttgattacaaaggaagacattactacgagtcttgttacattcaaggttccattgatttcatat |
235 |
Q |
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| T |
12957247 |
tatcattgtgcattttacagtacacacaacacactctttgattacaaaggtagacattactatgagtcttgttacattcaaggctccattgatttcatat |
12957346 |
T |
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