View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_high_5 (Length: 609)
Name: NF8251_high_5
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 20 - 582
Target Start/End: Complemental strand, 49738264 - 49737702
Alignment:
| Q |
20 |
agcagcaactatagtagaccggataattggttcaattcgaacagtacgccaatctacataaagaaccttttactattttttattccttttcatatcttta |
119 |
Q |
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| T |
49738264 |
agcagcaactatagtagaccggataattggttcaattcgaacagtacgccaatctacataaagaaccttttactattttttattccttttcatatcttta |
49738165 |
T |
|
| Q |
120 |
gctaacacaattactcgaatacgcaaggttgcatcatttactggtgagaagcaggtcataactcaatacaatcaatcattaactaaatcttacataattg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49738164 |
gctaacacaattactcgaatacgcaaggttgcatcatttactggtgagaagcaggccataactcaatacaatcaatcattaactaaatcttacataattg |
49738065 |
T |
|
| Q |
220 |
gactgcaagagggattggctattggtttaggcctcggattggttcgtttatttgtttattgtagttatgctttggctgtatggtttggagggaagatgat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49738064 |
gactgcaagagggattggctattggtttaggcctcggcttggttcgtttatttgtttattgtagttatgctttggctgtatggtttggagggaagatgat |
49737965 |
T |
|
| Q |
320 |
attagcgaaaggttatacaggaggggaagtcataagtgtattttttgcagtactgacaggttccttgtaagttaagttagtttctgctatatatatcatc |
419 |
Q |
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| T |
49737964 |
attagcgaaaggttatacaggaggggaagtcataagtgtattttttgcagtactgacaggttccttgtaagttaagttagtttctgctatatatatcatc |
49737865 |
T |
|
| Q |
420 |
tacaccgtgtgtccatacattattacatatcttaaaatttataacctgtggaattctggtgtctctgatatttatttatctgtcattgttagtgtgatgt |
519 |
Q |
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| T |
49737864 |
tacaccgtgtgtccatacattattacatatcttaaaatttataacctgtggaattctggtgtctctgatatttatttatctgtcattgttagtgcgatgt |
49737765 |
T |
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| Q |
520 |
gaaattgtattttctggtcggcctagttatctgatgctgcctttatagggacggtcatctctg |
582 |
Q |
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| T |
49737764 |
gaaattgtattttctggtcggcctagttatctgatactggctttatagggacggtcatctctg |
49737702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 5e-79; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 145 - 398
Target Start/End: Original strand, 51212052 - 51212305
Alignment:
| Q |
145 |
aggttgcatcatttactggtgagaagcaggtcataactcaatacaatcaatcattaactaaatcttacataattggactgcaagagggattggctattgg |
244 |
Q |
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|||||||||||||||| || ||||| || | ||| |||||||||||||||| ||| ||||| |||||| | ||||| | |||||||||||||||||||| |
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| T |
51212052 |
aggttgcatcatttaccggcgagaaacaagctatatctcaatacaatcaatccttagctaaagcttacaaagttggagtacaagagggattggctattgg |
51212151 |
T |
|
| Q |
245 |
tttaggcctcggattggttcgtttatttgtttattgtagttatgctttggctgtatggtttggagggaagatgatattagcgaaaggttatacaggaggg |
344 |
Q |
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|||||||||||| | |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| || | | |||||||||||||||||| |
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| T |
51212152 |
tttaggcctcggttcggttcgtttatttgtttactgcagttatgctttggctgtatggtttggagggaagatggtacttgagaaaggttatacaggaggt |
51212251 |
T |
|
| Q |
345 |
gaagtcataagtgtattttttgcagtactgacaggttccttgtaagttaagtta |
398 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||| |||||| |
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| T |
51212252 |
gaagtcataagtgtattttttgcagtactaactggttccttgtaagtcaagtta |
51212305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 367
Target Start/End: Original strand, 51145012 - 51145097
Alignment:
| Q |
282 |
agttatgctttggctgtatggtttggagggaagatgatattagcgaaaggttatacaggaggggaagtcataagtgtattttttgc |
367 |
Q |
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||||||| |||||||||||||||||| ||||| |||||| | | |||||| || ||||||||||| || || | |||| ||||||| |
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| T |
51145012 |
agttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaatttttgc |
51145097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 51211908 - 51211953
Alignment:
| Q |
20 |
agcagcaactatagtagaccggataattggttcaattcgaacagta |
65 |
Q |
| |
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|||||||||||||||||| | |||||| |||||||||||||||||| |
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| T |
51211908 |
agcagcaactatagtagagcagataatcggttcaattcgaacagta |
51211953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 29937928 - 29937875
Alignment:
| Q |
290 |
tttggctgtatggtttggagggaagatgatattagcgaaaggttatacaggagg |
343 |
Q |
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|||||||||||||||||| ||||| ||||| ||| |||||| ||||||||||| |
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| T |
29937928 |
tttggctgtatggtttggtgggaaattgataatagagaaaggatatacaggagg |
29937875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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