View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_high_6 (Length: 601)
Name: NF8251_high_6
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 298 - 585
Target Start/End: Complemental strand, 38299950 - 38299663
Alignment:
| Q |
298 |
actcgaccattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagc |
397 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299950 |
actcaaccattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagc |
38299851 |
T |
|
| Q |
398 |
ggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299850 |
ggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagt |
38299751 |
T |
|
| Q |
498 |
ttctcttcagtgtacaaatcctcaaaataaagctcgacaacgtcaggaggaggcaaaacaatatcttgacataaccactccatgatgt |
585 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
38299750 |
ttctcttcagtgtacaaatcctcaaaataaagctcgacaacgtcaggaggaggcaaaacaatatcttgacttaaccattccatgatgt |
38299663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 298 - 504
Target Start/End: Complemental strand, 38305869 - 38305663
Alignment:
| Q |
298 |
actcgaccattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagc |
397 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38305869 |
actcaaccattctctcacacatctcggctacagtgggtaaaacaacacagaagttgagaaccttactatttaacttccaatccgcgtcaacaaaatgcgc |
38305770 |
T |
|
| Q |
398 |
ggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagt |
497 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||| || ||| |
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| T |
38305769 |
agtcaaacagatataagtctcagcagtgttagattcccacaaatcaaaagttaaagatatcctattaggaatggtagccaattcttgtttaagcttcagt |
38305670 |
T |
|
| Q |
498 |
ttctctt |
504 |
Q |
| |
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||||||| |
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|
| T |
38305669 |
ttctctt |
38305663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 337 - 516
Target Start/End: Complemental strand, 38316558 - 38316379
Alignment:
| Q |
337 |
aaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattccca |
436 |
Q |
| |
|
||||||||| || || |||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |
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|
| T |
38316558 |
aaacaagacgaaagttgagaaccttactattcaacttccaattcgcgtcaacaaaatgagctgtcaaacaaatataagtctcagtggtgttagattccca |
38316459 |
T |
|
| Q |
437 |
cagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaat |
516 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |||||| | |||||||| || |||||||||| |||||||||| |
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|
| T |
38316458 |
caaatcaaaagttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaat |
38316379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 298 - 518
Target Start/End: Complemental strand, 38320695 - 38320475
Alignment:
| Q |
298 |
actcgaccattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagc |
397 |
Q |
| |
|
|||| |||||||||||||||||||||| | ||||||| |||| |||||| | ||||||||||| ||||| ||||||| ||||||| |||||||||| |
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| T |
38320695 |
actcaaccattctctcacacatctcagctccagtgggatcaacagtacagaaggtgagaaccttactctttaatttccaattcgcgtcagcaaaatgagc |
38320596 |
T |
|
| Q |
398 |
ggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagt |
497 |
Q |
| |
|
||||||||| ||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||| ||||||| | ||||||| |||||| |
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|
| T |
38320595 |
ggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaaatcctgtttaagcttgagt |
38320496 |
T |
|
| Q |
498 |
ttctcttcagtgtacaaatcc |
518 |
Q |
| |
|
||| ||| |||||||||||| |
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|
| T |
38320495 |
ttcgctttcgtgtacaaatcc |
38320475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 298 - 463
Target Start/End: Complemental strand, 38313191 - 38313023
Alignment:
| Q |
298 |
actcgaccattctctcacacatctcagatacagt----gggtaaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaat |
393 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||| |||| ||||||||||||| || ||||| ||||||||||||||||||| ||| ||||| |||| |
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| T |
38313191 |
actcaaccattctctcacacatctcagctccagtaggagggt-aaacaagacagaagttgagaactttactatttaacttccaattcgcatcaacgaaat |
38313093 |
T |
|
| Q |
394 |
gagcggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctatt |
463 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38313092 |
gagcagtcaaacaaatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatt |
38313023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 344 - 489
Target Start/End: Complemental strand, 38325396 - 38325251
Alignment:
| Q |
344 |
acagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattcccacagatca |
443 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| ||| || |||| | || |||| ||||||||||| |||| |
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| T |
38325396 |
acagaaattgagaaccttactatttaccttccaattcgcgtcaacaaaatgagcggtcagacaaatgtaaggcatagtagtgcaagattcccacaaatca |
38325297 |
T |
|
| Q |
444 |
aaagttaaagatatcctattaggaatagtagccagctgttgtttaa |
489 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| |||||||||| |
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|
| T |
38325296 |
aaagttaaagataccctattaggaatggtagccaattgttgtttaa |
38325251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 336 - 515
Target Start/End: Complemental strand, 38308564 - 38308385
Alignment:
| Q |
336 |
aaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattccc |
435 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| ||| ||| |||||||| |
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|
| T |
38308564 |
aaaacaagacagaaattgaaaagcttactatttaacttccaatccgcgccaacaaaatgagcggataaacaaatataagtgccagtagtacaagattccc |
38308465 |
T |
|
| Q |
436 |
acagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaa |
515 |
Q |
| |
|
||| ||||| |||||||||||| ||| |||||| |||||||| |||||||| | || |||||||||| ||||||||| |
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|
| T |
38308464 |
acaactcaaaggttaaagatatcttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgtacaaa |
38308385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 6e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 88 - 294
Target Start/End: Complemental strand, 24270294 - 24270093
Alignment:
| Q |
88 |
acaaagttgaaagctcatagtcataggtgaattgtgaatatcttatcatagttcagttcagaacttgtgctgttcaccaaaaagaaaaacatggcgagtg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24270294 |
acaaagttgaaagctcatagtcataggtgacttgtgaatatcttatcatagttcag-----aacttgtgctgttcaccaaaaagaaaaacatggcgagtg |
24270200 |
T |
|
| Q |
188 |
gtaggcaaattggtgtagctttagatttctccaaaggaagcaagatcgctctcaaatgggctatcgataatcttcttcgtaccggtgatacactctatat |
287 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
24270199 |
gaaggcaaattggtgtagctttagatttctccaaaggaagcaagatcgctctcaaatgggctatcgacaatcttcttcgtaccggtgatacactctatat |
24270100 |
T |
|
| Q |
288 |
cgttcat |
294 |
Q |
| |
|
||||||| |
|
|
| T |
24270099 |
cgttcat |
24270093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 337 - 516
Target Start/End: Original strand, 38850787 - 38850966
Alignment:
| Q |
337 |
aaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattccca |
436 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
38850787 |
aaacaagacggaaattgataaccttactatttaacttccaattcgcgtcaacaaaatgagcagtcaaacaaatataagtctcagtagtgttagattccca |
38850886 |
T |
|
| Q |
437 |
cagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaat |
516 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||| |||| | |||||||||| || ||||||||| |||||||||| |
|
|
| T |
38850887 |
caaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaat |
38850966 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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