View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8251_low_1 (Length: 934)
Name: NF8251_low_1
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_1 |
 | |
|
| [»] chr6 (7 HSPs) |
| |
|
| [»] scaffold0103 (2 HSPs) |
| |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 862; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 862; E-Value: 0
Query Start/End: Original strand, 11 - 934
Target Start/End: Complemental strand, 23808192 - 23807272
Alignment:
| Q |
11 |
atggacatcacacattcattaaaatgtcaaaacaataagcatatgaaccaacaggtcctgcggtaacacacttagcaaattttcaaccaagaataacctc |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23808192 |
atggaaatcacacattcattaaaatgtcaaaacaataagcatatgaaccaacaggtcctgcggtaacacacttagcaaattttcaaccaagaataacctc |
23808093 |
T |
|
| Q |
111 |
aacgtataaaagaaagttaaccaacaccatatcaacaaactttcaagtaagaatcacctcagtcaatctgatgctaatgcaaaagctaaccaaaaatcga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23808092 |
aacgtataaaagaaagttaaccaacaccatatcaacaaactttcaagtaagaatcacctcaatcaatctgatgctaatgcaaaagctaaccaaaaatcga |
23807993 |
T |
|
| Q |
211 |
aaacaacgcattacagagaagggcaatcagttacttgctctcaaagtcaccaatcagatcacaaaaactaaagattttcagcaaatttttcaggtaacaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23807992 |
aaacaacgcattacagagaagggcaatcagttacttgctctcaaagtcaccaatcagatcacaaaaactaaagattttcagcaaatttttcaggtaacaa |
23807893 |
T |
|
| Q |
311 |
tcagctcaatacaatgtatccaagaaagtaaaccaacactacaccagcaaattttcaagcatcagattttaacaattctaatcaatcaattttatgcaac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23807892 |
tcagctcaatacaatgtatccaagaaagtaaaccaacactacaccagcaaattttcaagcat---attttaacaattctaatcaatcaattttatgcaac |
23807796 |
T |
|
| Q |
411 |
caaagtgatccaatgtcatcattatagttaacttaaaaaatgaaagatccttattttatagactacaaatggataaacttgtttggaaattgaaacaaaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23807795 |
caaagtgatccaatgtcatcattatagttaacttaaaaaatgaaagatccttattttatagactacaaatggataaacttgtttggaaattgaaacaaaa |
23807696 |
T |
|
| Q |
511 |
tagagactatccttcacccaaatattgtatcaaacaccataattataactttattctcagacaaacactatctctcaaagtcaccaaccaaatcacaaga |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23807695 |
tagagactatccttcacccaaatattgtatcgaacaccatcattataactttattctcagacaaacactatctctcaaagtcaccaaccaaatcacaaga |
23807596 |
T |
|
| Q |
611 |
acttaagattttcagcaaattttcagataacaatcagttcaatatatccaagaaagtaaaccaagactatagcagcaaatttttaagcaaaaatttgtat |
710 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23807595 |
acttaagattttcaacaaattttcagataacaatcagttcaatatatccaagaaagtaaaccaagactatagcagcaaatttttaagcaaaaatttgtat |
23807496 |
T |
|
| Q |
711 |
cagaagtctattccaagaagtccattccnnnnnnnnttaagcaaaaatttagtaggtttataccagcaatttgtctatccctacacctgatggaatcagt |
810 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23807495 |
cagaagtctattccaagaagtccattccaaaaaaatttaagcaaaaatttagtaggttaataccagcaatttgtctatccctacacctgatggaatcagt |
23807396 |
T |
|
| Q |
811 |
taaatattccaaaaattacagttccagcgttggttcagacccaacctttaattttctaaatcaagcttttacattggagattagctacattgaaaacatc |
910 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23807395 |
taaatattccaaaaattacagttccagcgttggttcagacccaacctttaattttctaaatcaagcttttacattggagattagctacattgaaaacatc |
23807296 |
T |
|
| Q |
911 |
catcattccattccaaattttgta |
934 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
23807295 |
catcattccattccaaattttgta |
23807272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 849; E-Value: 0
Query Start/End: Original strand, 11 - 934
Target Start/End: Original strand, 22980212 - 22981136
Alignment:
| Q |
11 |
atggacatcacacattcattaaaatgtcaaaacaataagcatatgaaccaacaggtcctgcggtaacacacttagcaaattttcaaccaagaataacctc |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22980212 |
atggaaatcacacattcattaaaatgtcaaaacaataagcatatgaaccaacaggtcctgcggtaacacacttagcaaattttcaaccaagaataacctc |
22980311 |
T |
|
| Q |
111 |
aacgtataaaagaaagttaaccaacaccatatcaacaaactttcaagtaagaatcacctcagtcaatctgatgctaatgcaaaagctaaccaaaaatcga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22980312 |
aacgtataaaagaaagttaaccaacaccatatcaacaaactttcaagtaagaatcacctcaatcaatctgatgctaatgcaaaagctaaccaaaaatcga |
22980411 |
T |
|
| Q |
211 |
aaacaacgcattacagagaagggcaatcagttacttgctctcaaagtcaccaatcagatcacaaaaactaaagattttcagcaaatttttcaggtaacaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22980412 |
aaacaacgcattacagagaagggcaatcagttacttgctctcaaagtcaccaatcagatcacaaaaactaaagattttcagcaaatttttcaggtaacaa |
22980511 |
T |
|
| Q |
311 |
tcagctcaatacaatgtatccaagaaagtaaaccaacactacaccagcaaattttcaagcatcagattttaacaattctaatcaatcaattttatgcaac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22980512 |
tcagctcaatacaatgtatccaagaaagtaaaccaacactacaccagcaaattttcaagcat---attttaacaattctaatcaatcaattttatgcaac |
22980608 |
T |
|
| Q |
411 |
caaagtgatccaatgtcatcattatagtta----acttaaaaaatgaaagatccttattttatagactacaaatggataaacttgtttggaaattgaaac |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22980609 |
caaagtgatccaatgtcatcattatagttaacttacttaaaaaatgaaagatccttattttatagactacaaatggataaacttgtttggaaattgaaac |
22980708 |
T |
|
| Q |
507 |
aaaatagagactatccttcacccaaatattgtatcaaacaccataattataactttattctcagacaaacactatctctcaaagtcaccaaccaaatcac |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22980709 |
aaaatagagactatccttcacccaaatattgtatctaacaccatcattataactttattctcagacaaacactatctctcaaagtcaccaaccaaatcac |
22980808 |
T |
|
| Q |
607 |
aagaacttaagattttcagcaaattttcagataacaatcagttcaatatatccaagaaagtaaaccaagactatagcagcaaatttttaagcaaaaattt |
706 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22980809 |
aagaacttaagattttcatcaaattttcagataacaatcagttcaatatatccaagaaagtaaaccaagactatagcagcaaatttttaagcaaaaattt |
22980908 |
T |
|
| Q |
707 |
gtatcagaagtctattccaagaagtccattccnnnnnnnnttaagcaaaaatttagtaggtttataccagcaatttgtctatccctacacctgatggaat |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22980909 |
gtatcagaagtctattccaagaagtccattccaaaaaaatttaagcaaaaatttagtaggttaataccagcaatttgtctatccctacacctgatggaat |
22981008 |
T |
|
| Q |
807 |
cagttaaatattccaaaaattacagttccagcgttggttcagacccaacctttaattttctaaatcaagcttttacattggagattagctacattgaaaa |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22981009 |
cagttaaatattccaaaaattacagttccagcgttggttcagacccaacctttaattttctaaatcaagcttttacattggagattagctacattgaaaa |
22981108 |
T |
|
| Q |
907 |
catccatcattccattccaaattttgta |
934 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
22981109 |
catccatcattccattccaaattttgta |
22981136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 448 - 934
Target Start/End: Original strand, 2633049 - 2633535
Alignment:
| Q |
448 |
aaatgaaagatccttattttatagactacaaatggataaacttgtttggaaattgaaacaaaatagagactatccttcacccaaatattgtatcaaacac |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2633049 |
aaatgaaagatccttattttatagactacaaatggataaacttgtttggaaattgaaacaaaatagagactatccttcacccaaatattgtatcaaacac |
2633148 |
T |
|
| Q |
548 |
cataattataactttattctcagacaaacactatctctcaaagtcaccaaccaaatcacaagaacttaagattttcagcaaattttcagataacaatcag |
647 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2633149 |
catcattataactttattctcagacaaacactatctctcaaagtcaccaaccaaatcacaagaacttaagattttcagtaaattttcagataacaatcag |
2633248 |
T |
|
| Q |
648 |
ttcaatatatccaagaaagtaaaccaagactatagcagcaaatttttaagcaaaaatttgtatcagaagtctattccaagaagtccattccnnnnnnnnt |
747 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2633249 |
ttcaatatatccaagaaagtaaaccaagactatagcagcaaatttttaagcaaaaatttgtatcagaagtctattccaagaagtccattccaaaaaaatt |
2633348 |
T |
|
| Q |
748 |
taagcaaaaatttagtaggtttataccagcaatttgtctatccctacacctgatggaatcagttaaatattccaaaaattacagttccagcgttggttca |
847 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2633349 |
taagcaaaaatttagtaggtttataccagcaatttgtctatccctacacctgatggaatcagttaaatattccaaaaattacagttccagcgttggttca |
2633448 |
T |
|
| Q |
848 |
gacccaacctttaattttctaaatcaagcttttacattggagattagctacattgaaaacatccatcattccattccaaattttgta |
934 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2633449 |
gacccaacctttaattttctaaatcaagcttttacattggagattagctacattgaaaacatccatcattccattccaaattttgta |
2633535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 12082443 - 12082631
Alignment:
| Q |
24 |
attcattaaaatgtcaaaacaataagcatatgaaccaacaggtcctgcggtaacacacttagcaaattttcaaccaagaataacctcaacgtataaaaga |
123 |
Q |
| |
|
|||||||| | ||||||||| |||| ||||| |||||||||||||||||||||| | |||| ||||||||||| ||||||||| |||| |||||| | | |
|
|
| T |
12082443 |
attcattacagtgtcaaaacgataaacatataaaccaacaggtcctgcggtaacgcgcttacgaaattttcaactaagaataacgtcaatgtataagaca |
12082542 |
T |
|
| Q |
124 |
aagttaaccaacaccatatcaacaaactttcaagtaagaatcacctcagtcaatctgatgctaatgcaaaagctaaccaaaaatcgaaa |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
12082543 |
aagttaaccaacaccatattaacaaactttcaagtaagaatcacctcaatcaatctgatgttaatggaaaagctaaccaaagatcgaaa |
12082631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 248 - 371
Target Start/End: Original strand, 2633183 - 2633300
Alignment:
| Q |
248 |
ctctcaaagtcaccaatcagatcacaaaaactaaagattttcagcaaatttttcaggtaacaatcagctcaatacaatgtatccaagaaagtaaaccaac |
347 |
Q |
| |
|
|||||||||||||||| || ||||||| |||| ||||||||||| ||| ||||||| |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
2633183 |
ctctcaaagtcaccaaccaaatcacaagaacttaagattttcagtaaa-ttttcagataacaatcagttcaata-----tatccaagaaagtaaaccaag |
2633276 |
T |
|
| Q |
348 |
actacaccagcaaattttcaagca |
371 |
Q |
| |
|
|||| | ||||||||||| ||||| |
|
|
| T |
2633277 |
actatagcagcaaatttttaagca |
2633300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 12082686 - 12082743
Alignment:
| Q |
367 |
aagcatcagattttaacaattctaatcaatcaattttatgcaaccaaagtgatccaat |
424 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12082686 |
aagcatcagattttaacaattcaaatcaatcaatttcatgcaaccaaagtgatccaat |
12082743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 516 - 583
Target Start/End: Complemental strand, 872305 - 872238
Alignment:
| Q |
516 |
actatccttcacccaaatattgtatcaaacaccataattataactttattctcagacaaacactatct |
583 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| || |||||||| | ||||| ||||||||||||||| |
|
|
| T |
872305 |
actatctttcacccaaattttgtatcaaacactatcattataacctcattctgagacaaacactatct |
872238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 448 - 934
Target Start/End: Complemental strand, 6960 - 6474
Alignment:
| Q |
448 |
aaatgaaagatccttattttatagactacaaatggataaacttgtttggaaattgaaacaaaatagagactatccttcacccaaatattgtatcaaacac |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6960 |
aaatgaaagatccttattttatagactacaaatggataaacttgtttggaaattgaaacaaaatagagactatccttcacccaaatattgtatcaaacac |
6861 |
T |
|
| Q |
548 |
cataattataactttattctcagacaaacactatctctcaaagtcaccaaccaaatcacaagaacttaagattttcagcaaattttcagataacaatcag |
647 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6860 |
catcattataactttattctcagacaaacactatctctcaaagtcaccaaccaaatcacaagaacttaagattttcattaaattttcagataacaatcag |
6761 |
T |
|
| Q |
648 |
ttcaatatatccaagaaagtaaaccaagactatagcagcaaatttttaagcaaaaatttgtatcagaagtctattccaagaagtccattccnnnnnnnnt |
747 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6760 |
ttcaatatatccaagaaagtaaaccaagactatagcagcaaatttttaagcaaaaatttgtatcagaagtctattccaagaagtccattccaaaaaaatt |
6661 |
T |
|
| Q |
748 |
taagcaaaaatttagtaggtttataccagcaatttgtctatccctacacctgatggaatcagttaaatattccaaaaattacagttccagcgttggttca |
847 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6660 |
taagcaaaaatttagtaggttaataccagcaatttgtctatccctacacctgatggaatcagttaaatattccaaaaattacagttccagcgttggttca |
6561 |
T |
|
| Q |
848 |
gacccaacctttaattttctaaatcaagcttttacattggagattagctacattgaaaacatccatcattccattccaaattttgta |
934 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6560 |
gacccaacctttaattttctaaatcaagcttttacattggagattagctacattgaaaacatccatcattccattccaaattttgta |
6474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 248 - 371
Target Start/End: Complemental strand, 6826 - 6709
Alignment:
| Q |
248 |
ctctcaaagtcaccaatcagatcacaaaaactaaagattttcagcaaatttttcaggtaacaatcagctcaatacaatgtatccaagaaagtaaaccaac |
347 |
Q |
| |
|
|||||||||||||||| || ||||||| |||| |||||||||| ||||||| ||| |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
6826 |
ctctcaaagtcaccaaccaaatcacaagaacttaagattttcattaaatttt-cagataacaatcagttcaata-----tatccaagaaagtaaaccaag |
6733 |
T |
|
| Q |
348 |
actacaccagcaaattttcaagca |
371 |
Q |
| |
|
|||| | ||||||||||| ||||| |
|
|
| T |
6732 |
actatagcagcaaatttttaagca |
6709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 627 - 934
Target Start/End: Complemental strand, 12809356 - 12809049
Alignment:
| Q |
627 |
aaattttcagataacaatcagttcaatatatccaagaaagtaaaccaagactatagcagcaaatttttaagcaaaaatttgtatcagaagtctattccaa |
726 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12809356 |
aaattttcagataacaatcagttcaatatatccaagaaagtaaaccaagactatagcagcaaatttttaagcaaaaatttgtatcagaagtctattccaa |
12809257 |
T |
|
| Q |
727 |
gaagtccattccnnnnnnnnttaagcaaaaatttagtaggtttataccagcaatttgtctatccctacacctgatggaatcagttaaatattccaaaaat |
826 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12809256 |
gaagtccattccaaaaaaatttaagcaaaaatttagtaggtttataccagcaatttgtctatccctacacctgatggaatcagttaaatattccaaaaat |
12809157 |
T |
|
| Q |
827 |
tacagttccagcgttggttcagacccaacctttaattttctaaatcaagcttttacattggagattagctacattgaaaacatccatcattccattccaa |
926 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12809156 |
tacagttccagcgttggttcagacccaacctttaattttctaaatcaagcttttacattggagattagctacattgaaaacatccatcattccattccaa |
12809057 |
T |
|
| Q |
927 |
attttgta |
934 |
Q |
| |
|
|||||||| |
|
|
| T |
12809056 |
attttgta |
12809049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 37432731 - 37432919
Alignment:
| Q |
24 |
attcattaaaatgtcaaaacaataagcatatgaaccaacaggtcctgcggtaacacacttagcaaattttcaaccaagaataacctcaacgtataaaaga |
123 |
Q |
| |
|
|||||||| | ||||||||| |||| ||||| |||||||||||||||||| ||||| || | ||||||||||| |||||||||||||| |||||| | | |
|
|
| T |
37432731 |
attcattacagtgtcaaaacgataaacatataaaccaacaggtcctgcggaaacacgctcacgaaattttcaactaagaataacctcaatgtataagaca |
37432830 |
T |
|
| Q |
124 |
aagttaaccaacaccatatcaacaaactttcaagtaagaatcacctcagtcaatctgatgctaatgcaaaagctaaccaaaaatcgaaa |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37432831 |
aagttaaccaacaccatattaacaaactttcaagtaagaatctcctcaatcaatctgatgctaatgcaaaagctaaccaaagatcgaaa |
37432919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 37432974 - 37433031
Alignment:
| Q |
367 |
aagcatcagattttaacaattctaatcaatcaattttatgcaaccaaagtgatccaat |
424 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37432974 |
aagcatcagattctaataattcaaatcaatcaatttcatgcaaccaaagtgatccaat |
37433031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 516 - 583
Target Start/End: Original strand, 275904 - 275971
Alignment:
| Q |
516 |
actatccttcacccaaatattgtatcaaacaccataattataactttattctcagacaaacactatct |
583 |
Q |
| |
|
|||||| ||||||||||| || |||||||||| ||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
275904 |
actatctttcacccaaattttatatcaaacactataattataacctcattctgagacaaacactatct |
275971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 12809353 - 12809284
Alignment:
| Q |
297 |
ttttcaggtaacaatcagctcaatacaatgtatccaagaaagtaaaccaacactacaccagcaaattttcaagca |
371 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||||||||||||||| |||| | ||||||||||| ||||| |
|
|
| T |
12809353 |
ttttcagataacaatcagttcaata-----tatccaagaaagtaaaccaagactatagcagcaaatttttaagca |
12809284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 1e-56; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 32446830 - 32447018
Alignment:
| Q |
24 |
attcattaaaatgtcaaaacaataagcatatgaaccaacaggtcctgcggtaacacacttagcaaattttcaaccaagaataacctcaacgtataaaaga |
123 |
Q |
| |
|
|||||||| | ||||||||| |||| || || |||||||||||| ||||||||| | |||| ||||||||||| ||||||||||||| |||||| | | |
|
|
| T |
32446830 |
attcattacagtgtcaaaacgataaacaaataaaccaacaggtcatgcggtaacgcgcttacgaaattttcaactgagaataacctcaatgtataagaca |
32446929 |
T |
|
| Q |
124 |
aagttaaccaacaccatatcaacaaactttcaagtaagaatcacctcagtcaatctgatgctaatgcaaaagctaaccaaaaatcgaaa |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32446930 |
aagttaaccaacaccatattaacaaactttcaagtaagaatcacctcaatcaatctgatgctaatgcaaaagctaaccaaatatcgaaa |
32447018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 27260655 - 27260832
Alignment:
| Q |
35 |
tgtcaaaacaataagcatatgaaccaacaggtcctgcggtaacacacttagcaaattttcaaccaagaataacctcaacgtataaaagaaagttaaccaa |
134 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||||||||||||| | |||| ||||||||||| ||||||||||||| |||||| | |||||||||||| |
|
|
| T |
27260655 |
tgtcaaaacgataaacatataaaccaacaggtcctgcggtaaagcgcttatgaaattttcaactgagaataacctcaatgtataagacaaagttaaccaa |
27260754 |
T |
|
| Q |
135 |
caccatatcaacaaactttcaagtaagaatcacctcagtcaatctgatgctaatgcaaaagctaaccaaaaatcgaaa |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
27260755 |
caccatattaacaaactttcaagtaagaatcacctcaatcaatccgatgctaatgcaaaagctaaccaaagatcgaaa |
27260832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 32447073 - 32447130
Alignment:
| Q |
367 |
aagcatcagattttaacaattctaatcaatcaattttatgcaaccaaagtgatccaat |
424 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32447073 |
aagcatcagattttaacaatttaaatcaatcaattttatgcaaccaaagtgatccaat |
32447130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 27260887 - 27260944
Alignment:
| Q |
367 |
aagcatcagattttaacaattctaatcaatcaattttatgcaaccaaagtgatccaat |
424 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |
|
|
| T |
27260887 |
aagcatcagattttaacaatttaaatcaatcaattgcatgcaaccaaagtgattcaat |
27260944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 31158299 - 31158253
Alignment:
| Q |
459 |
ccttattttatagactacaaatggataaacttgtttggaaattgaaa |
505 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
31158299 |
ccttattttatagactacagatggacaaacttgtttggaatttgaaa |
31158253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 587
Target Start/End: Original strand, 4637549 - 4637620
Alignment:
| Q |
516 |
actatccttcacccaaatattgtatcaaacaccataattataactttattctcagacaaacactatctctca |
587 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||| | || ||||| | ||||| ||||||||||||||||||| |
|
|
| T |
4637549 |
actatctttcacccaaattttgcatcaaacactactatcataacctaattctgagacaaacactatctctca |
4637620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 21838795 - 21838615
Alignment:
| Q |
24 |
attcattaaaatgtcaaaacaataagcatatgaaccaacaggtcctgcggtaacacacttagcaaattttcaaccaagaataacctcaacgtataaaaga |
123 |
Q |
| |
|
|||||||| ||| ||||||| |||| ||||| |||||||||||||||||||||| | |||| ||||||||||| | |||||||||||| |||||| | | |
|
|
| T |
21838795 |
attcattacaatatcaaaacgataaacatataaaccaacaggtcctgcggtaacgcgcttacgaaattttcaactacgaataacctcaatgtataagaca |
21838696 |
T |
|
| Q |
124 |
aagttaaccaacaccatatcaacaaactttcaagtaagaatcacctcagtcaatctgatgctaatgcaaaagctaaccaaa |
204 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21838695 |
aaattaaccaacaccatattaacaaactttcaagtaacaatcacctcaatcaatctgatgctaatgcaaaagctaaccaaa |
21838615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 367 - 424
Target Start/End: Complemental strand, 21838552 - 21838496
Alignment:
| Q |
367 |
aagcatcagattttaacaattctaatcaatcaattttatgcaaccaaagtgatccaat |
424 |
Q |
| |
|
||||||||||||||| |||||| ||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
21838552 |
aagcatcagattttagcaattcaaatcaat-aatttcatgcaaccaaagtgatccaat |
21838496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 381 - 445
Target Start/End: Original strand, 25126165 - 25126229
Alignment:
| Q |
381 |
aacaattctaatcaatcaattttatgcaaccaaagtgatccaatgtcatcattatagttaactta |
445 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
25126165 |
aacaattcaaatcaatcaattttatgcaaccaaagtgatccaatggcatcaccatagttaactta |
25126229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 505
Target Start/End: Original strand, 25126353 - 25126399
Alignment:
| Q |
459 |
ccttattttatagactacaaatggataaacttgtttggaaattgaaa |
505 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
25126353 |
ccttattttatagactacaaatggacaaacttgtttggaatttgaaa |
25126399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 516 - 583
Target Start/End: Original strand, 25126875 - 25126942
Alignment:
| Q |
516 |
actatccttcacccaaatattgtatcaaacaccataattataactttattctcagacaaacactatct |
583 |
Q |
| |
|
|||||| ||||||||||| || |||||||||| || |||||||| | ||||| ||||||||||||||| |
|
|
| T |
25126875 |
actatctttcacccaaattttttatcaaacactattattataacctcattctgagacaaacactatct |
25126942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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