View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_10 (Length: 590)
Name: NF8251_low_10
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 48014007 - 48014581
Alignment:
| Q |
1 |
ttttcatggtttcttacggcggaattgataaacacaacgctaagcaaacatacacagatgattttataacgcgttgagttnnnnnnntaataattaagat |
100 |
Q |
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| T |
48014007 |
ttttcatggtttcttacggcggaattgataaacacaacgctaagcaaacatacacagatgattttataacgcgttgagttaaaaaaataataattaagat |
48014106 |
T |
|
| Q |
101 |
ttaatgtgatcttgaagaaaaatgtagagcataannnnnnnn--ctttagaattttagtggctcaatagaagtgtcaatgatggttgatttcattgaaaa |
198 |
Q |
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| T |
48014107 |
ttaatgtgatcttgaagaaaaatgtagagcataattttttttttctttggaattttagtggctcaatagaagtgtcaatgatggttgatttcattgataa |
48014206 |
T |
|
| Q |
199 |
gaaatttacttgtgtctcgtaagactgtgcattcaactacaatagtcaggataatgacttctatagtgagcaatttgtaaatacatttgttgtcacttgt |
298 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48014207 |
gaaatttactcgtgtcttgtaagactgtgcattcaactacaataatcaggataatgacttctatagtgagaaatttgtaaatacatttgttgtcacttgt |
48014306 |
T |
|
| Q |
299 |
tgagtgttacgacaaatcctgatatatgtcaatctatgaatgccaactcgcctaaacttttttattaccaaagtggctcaataaaaacatctcacatatt |
398 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48014307 |
tgagtgttaagacaaatcctgatatatgtcaatctatgaatgccaactcgcctaaacttttttattatcaaagtggctcaataaaaacatctcacatatt |
48014406 |
T |
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| Q |
399 |
taagtgttttgaactaattcatggcctcacccaacaagacaacatggtccaatctgcacagtgatgctcgagtcatcatggatgcacaatgtaaccacaa |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48014407 |
taagtgttttgaactaattcatggcctcacccaacaagacaacatggtccaatatgcacaatgatgctcgagtcatcatggatgcacaatgtaaccacaa |
48014506 |
T |
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| Q |
499 |
tgcatcgctctgagccgaattaggaccctctggctatccactcaacttttatattggattcatctcgtagtgaaa |
573 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48014507 |
tgtatcgctctgagccgaattaggaccctctggctatccactcaacttttatattggattcatctcgtaatgaaa |
48014581 |
T |
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