View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8251_low_11 (Length: 560)

Name: NF8251_low_11
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8251_low_11
NF8251_low_11
[»] chr1 (1 HSPs)
chr1 (72-501)||(40897586-40898010)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 72 - 501
Target Start/End: Original strand, 40897586 - 40898010
Alignment:
Q  72 ataacaagtacaatcataaaaattgggcagtataaaattaaccaatgatgttgttacccagtaagtcttgtgtacgatcctccatttgaattaaattgga 171  Q
    |||| ||||||||||| |||||||| |||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||    
T  40897586 ataataagtacaatcagaaaaattgtgcagcataaaatgaaccaatgatgttgttacctagtaagtcttgtgtacaatcctccatttggattaaattgga 40897685  T
Q  172 agccagttctgaaccagagggaactaactaacttcgatgaaatttttatgagagcagtaatgcctgcaagagaagtgcaaacgtcgtggctggcgctagc 271  Q
    ||||| |||||||||||  ||    ||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| || ||||| ||||||||    
T  40897686 agccaattctgaaccaggtgg----aactaacttagatgaaatttttatgagagcagtaatgcctgcgagagaagtgcgaacatcatggctagcgctagc 40897781  T
Q  272 aacgacgaggctcttgttcatattttttcctctcaacttggtgagtggcctctttttgtttgatgagtgaggcacacagatgcatttctctccttatggc 371  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  40897782 aacggcgaggctcttgttcatatttttt-ctctcagcttggtgagtggcctctttttgtttgataagtgaggcacacaaatgcatttctctccttatggc 40897880  T
Q  372 tctaccatctataaatagaaaacctaagacagcaacaagtatcaccaccaacattacactcaatagagccaatctcattttcttataactcgcatcaaat 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| ||||||||| |||||| ||||||||    
T  40897881 tctaccatctataaatagaaaacctaagacagcaacaagtatcattactaacattacattcaatagagccaatcccattttcttgtaactcacatcaaat 40897980  T
Q  472 ccattgcttcgtacagccaaaacatacacc 501  Q
    ||||| ||| ||||||||||||||| ||||    
T  40897981 ccatttcttggtacagccaaaacattcacc 40898010  T

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