View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8251_low_12 (Length: 553)

Name: NF8251_low_12
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8251_low_12
NF8251_low_12
[»] chr8 (2 HSPs)
chr8 (18-543)||(7551379-7551902)
chr8 (101-171)||(5739579-5739651)
[»] chr1 (1 HSPs)
chr1 (107-171)||(43328455-43328520)
[»] chr5 (2 HSPs)
chr5 (101-139)||(19625931-19625969)
chr5 (101-168)||(16315864-16315932)
[»] chr3 (2 HSPs)
chr3 (113-162)||(31207836-31207886)
chr3 (56-132)||(1502602-1502676)
[»] chr7 (1 HSPs)
chr7 (115-181)||(953674-953742)
[»] chr6 (1 HSPs)
chr6 (107-139)||(6916753-6916785)
[»] chr4 (2 HSPs)
chr4 (101-129)||(7205541-7205569)
chr4 (101-176)||(37496687-37496763)
[»] chr2 (1 HSPs)
chr2 (103-170)||(41047863-41047931)


Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Original strand, 7551379 - 7551902
Alignment:
Q  18 cagtacattccctttgttgcatcttgttctattcccgactatgtagcaccgatatttctgattcaagacgtattcaatatgtccaacactgacacatgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  7551379 cagtacattccctttgttgcatcttgttctattcccgactatgtagcaccgatatttctgattcaagacgtattcaat--gtccaatactgacacatgta 7551476  T
Q  118 gttacattcaattattcaatttctcaaataattatcaatgtcaacgtgtcagtgacgtgcttggcatgtgtctgtgtcagtgcttcatagattttccaac 217  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  7551477 gttacattcaattattcaatttctcaaataattatcagtgtcaacgtgtcagtgacgtgtttggcatgtgtctgtgtaagtgcttcatagattttccaac 7551576  T
Q  218 cgataccatcaagaaccagaaagagtagagaagcagctttcagacctagcaagtccagaaccatgaatttctctagtagtcttattaataggactacttg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7551577 cgataccatcaagaaccagaaagagtagagaagcagctttcagacctagcaagtccagaaccatgaatttctctagtagtcttattaataggactacttg 7551676  T
Q  318 gtgtggacctaaccaaactcctcctaagaatttgtctcatagctgaaatcaaatgaactgctggatttggaggaggacctgaagtgttgaattttttgca 417  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7551677 gtgtggacctaaccaaactcctcctaagaatctgtctcatagctgaaatcaaatgaactgctggatttggaggaggacctgaagtattgaattttttgca 7551776  T
Q  418 aaagttcatatgttttgtcattgcttcttctgtgcttacaagtctttctgaccttacaatttcatctttaacagcttcaccacataatccacaaacccat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7551777 aaagttcatatgttttgtcattgcttcttctgtgcttacaagtctttctgaccttacaatttcatctttaacagcttcaccacataatccacaaacccat 7551876  T
Q  518 tttccttgatacctttctctgcttct 543  Q
    ||||||||||||||||||||| ||||    
T  7551877 tttccttgatacctttctctgattct 7551902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 5739651 - 5739579
Alignment:
Q  101 caacactgacacatgtagttacattcaattatt--caatttctcaaataattatcaatgtcaacgtgtcagtg 171  Q
    |||||| |||||||||| ||||||||||| |||  || |||||||||| |||||||||| |||| || |||||    
T  5739651 caacaccgacacatgtacttacattcaatcatttccattttctcaaattattatcaatgccaacatgacagtg 5739579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 43328520 - 43328455
Alignment:
Q  107 tgacacatgtagttacattcaattatt-caatttctcaaataattatcaatgtcaacgtgtcagtg 171  Q
    |||||||||| |||||||| ||||||| || |||||||||| ||||| | ||||||||||||||||    
T  43328520 tgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtg 43328455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 19625931 - 19625969
Alignment:
Q  101 caacactgacacatgtagttacattcaattattcaattt 139  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  19625931 caacactgacacatgtggttacattcaattattccattt 19625969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 16315932 - 16315864
Alignment:
Q  101 caacactgacacatgtagttacattcaattat-tcaatttctcaaataattatcaatgtcaacgtgtca 168  Q
    |||||| || |||||| ||||||||||||||| ||| || ||||||| ||||||| ||||||| |||||    
T  16315932 caacacagatacatgtggttacattcaattatatcatttcctcaaattattatcagtgtcaacatgtca 16315864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 31207886 - 31207836
Alignment:
Q  113 atgtagttacattcaattat-tcaatttctcaaataattatcaatgtcaac 162  Q
    |||||||||||||||||||| ||| ||||||||||||||| || |||||||    
T  31207886 atgtagttacattcaattatgtcattttctcaaataattaccattgtcaac 31207836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 1502676 - 1502602
Alignment:
Q  56 ctatgtagcaccgatatttctgattcaagacgtattcaatatgtccaacactgacacatgtagttacattcaattat 132  Q
    |||||||||||||| | |||||||  ||||||| |||  | |||||||||| |||||||||  ||||||||||||||    
T  1502676 ctatgtagcaccgacacttctgatagaagacgtgttc--tgtgtccaacacagacacatgtgattacattcaattat 1502602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 953742 - 953674
Alignment:
Q  115 gtagttacattcaattattc--aatttctcaaataattatcaatgtcaacgtgtcagtgacgtgcttgg 181  Q
    ||||||||||||||||  ||  | |||||||||| |||||||||||| ||||||||||| |||| ||||    
T  953742 gtagttacattcaatttctcccattttctcaaatcattatcaatgtcgacgtgtcagtgtcgtgtttgg 953674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 6916785 - 6916753
Alignment:
Q  107 tgacacatgtagttacattcaattattcaattt 139  Q
    |||||||||| ||||||||||||||||||||||    
T  6916785 tgacacatgtggttacattcaattattcaattt 6916753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 129
Target Start/End: Original strand, 7205541 - 7205569
Alignment:
Q  101 caacactgacacatgtagttacattcaat 129  Q
    |||||||||||||||||||||||||||||    
T  7205541 caacactgacacatgtagttacattcaat 7205569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 37496763 - 37496687
Alignment:
Q  101 caacactgacacatgtagttacattcaattat-tcaatttctcaaataattatcaatgtcaacgtgtcagtgacgtg 176  Q
    |||||| ||||| |||  ||||||| |||||| ||| ||||||||| |||||||  |||||||||||||||| ||||    
T  37496763 caacaccgacacttgtgattacattgaattatgtcattttctcaaaaaattatcggtgtcaacgtgtcagtgtcgtg 37496687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 41047931 - 41047863
Alignment:
Q  103 acactgacacatgtagttacattcaattatt-caatttctcaaataattatcaatgtcaacgtgtcagt 170  Q
    ||||| ||||||||  ||||||||||||||| || ||| |||||| ||||||| |||| ||||||||||    
T  41047931 acacttacacatgtgtttacattcaattattccactttttcaaattattatcagtgtcgacgtgtcagt 41047863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University