View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_16 (Length: 516)
Name: NF8251_low_16
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 498
Target Start/End: Original strand, 2608419 - 2608900
Alignment:
| Q |
17 |
cacacgtgttgcaaattcaagcctatccgcaagaggtacactaaattctctccaacaattattcccaacatcaaatcccatcacattatatgccctagcc |
116 |
Q |
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|||| |||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
2608419 |
cacaagtgtagcaaattcaagcctatctgcaagaggcacactaaattccctccaacaattattcccaacatcaaatcccattacactatatgccctagct |
2608518 |
T |
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| Q |
117 |
gaggtaatccaatacaacgttgttgttcttcttccctctatacacacattctcatttggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcg |
216 |
Q |
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||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2608519 |
gaggttatccaatacaatgttgttgttcttgttccctctatacacacattctcatttggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcg |
2608618 |
T |
|
| Q |
217 |
atccaacgattttccacgtgtcaatacaagattcatatatttcaacggtcggttcatatgtggcgccaccgtgtttatcttcggacatgcccccggccac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2608619 |
atccaacgattttccacgtgtcaatacaagattcatatatttcaacggtcggttcatatgtggcgccaccgtgtttatcttcggacatgcccccggccac |
2608718 |
T |
|
| Q |
317 |
gtggattctaaaacaaggaaaacaccaaacatcatttgattccaaaattgtgacaattccacaagctggattagtccttgaaacattcaacttaggaagg |
416 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
2608719 |
gtagattctaaaacaaggaaaacaccaaacatcatttggttccaaaattgtaacaattccacaagctggatttgttcttgaaacattcaacttaggaagg |
2608818 |
T |
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| Q |
417 |
tacttgaattgtcttgtaaaagggttacaaagaaccaattgaagtgttgttgaatttgttacctttaaaaggatgaggctac |
498 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
2608819 |
tacttgaattgtcttgtaaaagggttacaaagaaccagttgaagtgttgttgaatttgtgaccttcaaaaggatgaggctac |
2608900 |
T |
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