View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_18 (Length: 485)
Name: NF8251_low_18
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2431425 - 2431654
Alignment:
| Q |
1 |
tccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaatgtacaaaattgagcacaatgat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431425 |
tccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaatgtacaaaattgagcacaatgat |
2431524 |
T |
|
| Q |
101 |
gtcccactttcctattacatcgggattcttggtatatgcgttcaacaattttaatttatattgatattagtcgcgtagttttcttccattttgttgtgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2431525 |
gtcccactttcctattacatcgggattcttggtatatgcgttcaacaatttcaatttatattgatattaatcgcgtagttttcttccattttgttgtgta |
2431624 |
T |
|
| Q |
201 |
tttttgacatatttcatgcttttgtttgag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
2431625 |
tttttgacatatttcatgcttttgtttgag |
2431654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 268 - 471
Target Start/End: Complemental strand, 2497179 - 2496976
Alignment:
| Q |
268 |
aggtggatcttttgaagaataaatttggatttgatggaggtttcaactacaaggaagagcctgacctcgatgcagctttgaaaaggtttgtattctgcac |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2497179 |
aggtggatcttttgaagaataaatttggatttgatggaggtttcaactacaaggaagagcctgacctcgatgcagctttgaaaaggtttgtattctgcac |
2497080 |
T |
|
| Q |
368 |
tgaacagtttggtcatagaaagatttagttgttacttcattgtgtagccattataaatttatattacaatttacagtgcctagtaataaaatacagtagt |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2497079 |
tgaacagtttggtcatagaaagatttagttgttacttcattgtgtagccattataaattgatattacaatttacagtgcctagtaataaaatacagtagt |
2496980 |
T |
|
| Q |
468 |
tact |
471 |
Q |
| |
|
|||| |
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|
| T |
2496979 |
tact |
2496976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2434810 - 2435044
Alignment:
| Q |
1 |
tccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaatgtacaaaattgagcacaatgat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| |
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| T |
2434810 |
tccagattataagaaagatgattcagtttggagtcttactaaatgggaagagtatagtttggttcctacaactggaattttcaaaattgagcacaatgat |
2434909 |
T |
|
| Q |
101 |
gtcccactttcctattacatcgggattcttggtata-----tgcgttcaacaattttaatttatattgatattagtcgcgtagttttcttccattttgtt |
195 |
Q |
| |
|
||||||||||||||||| | ||| |||||||||| | | ||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
2434910 |
gtcccactttcctattataccggaattcttggtacacgcgttccgttcaacaatttcaatttatattgatattagtcgcgcaattttcttccattttgtt |
2435009 |
T |
|
| Q |
196 |
gtgtatttttgacata-tttcatgcttttgtttgag |
230 |
Q |
| |
|
|||| ||||||||||| ||| | ||||||||||||| |
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|
| T |
2435010 |
gtgt-tttttgacatatttttacgcttttgtttgag |
2435044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 2428446 - 2428637
Alignment:
| Q |
1 |
tccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaa---tgtacaaaattgagcacaat |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || | | |||||||||||| | |
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|
| T |
2428446 |
tccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctgcagctcaaatacttttcaaaattgagcataca |
2428545 |
T |
|
| Q |
98 |
gatgtcccactttcctattacatcgggattcttggtatatgcgttcaacaattttaatttatattgatattagtcgcgtagttttcttccattt |
191 |
Q |
| |
|
||||||||||||||||| || | || ||||| || |||| ||||||||||| ||||| ||| || |||||||||||||||||| |||||| |
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|
| T |
2428546 |
gatgtcccactttcctactatactggaattctcgg--tatgtattcaacaatttcaatttgtatcaatgttagtcgcgtagttttctgccattt |
2428637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 2432018 - 2432125
Alignment:
| Q |
247 |
tgaactgaattatggcacacaaggtggatcttttgaagaataaatttggatttgatggaggtttcaactacaaggaagagcctgacctcgatgcagcttt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||| ||||| ||||||||| |||||||||| |
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|
| T |
2432018 |
tgaactgaattatggcacacaaggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaagaacctgacctcaatgcagcttt |
2432117 |
T |
|
| Q |
347 |
gaaaaggt |
354 |
Q |
| |
|
||||||| |
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|
| T |
2432118 |
aaaaaggt |
2432125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 1458739 - 1458930
Alignment:
| Q |
1 |
tccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaa---tgtacaaaattgagcacaat |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| || || || | | |||||||||||| | |
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|
| T |
1458739 |
tccagattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctcaaatacttttcaaaattgagcataca |
1458838 |
T |
|
| Q |
98 |
gatgtcccactttcctattacatcgggattcttggtatatgcgttcaacaattttaatttatattgatattagtcgcgtagttttcttccattt |
191 |
Q |
| |
|
||||||||||||||||| || | || ||||| || |||| ||||||||||| ||||| ||| || |||||||||||||||||| |||||| |
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|
| T |
1458839 |
gatgtcccactttcctactatactggaattctcgg--tatgtattcaacaatttcaatttgtatcaatgttagtcgcgtagttttctgccattt |
1458930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 354
Target Start/End: Original strand, 1459408 - 1459500
Alignment:
| Q |
262 |
cacacaaggtggatcttttgaagaataaatttggatttgatggaggtttcaactacaaggaagagcctgacctcgatgcagctttgaaaaggt |
354 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||| ||||| || || |||||||| ||||| || |||||| |||||||||||||||||| |
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|
| T |
1459408 |
cacaccaggtggatttgttgaaaaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcagctttgaaaaggt |
1459500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 354
Target Start/End: Original strand, 2429115 - 2429207
Alignment:
| Q |
262 |
cacacaaggtggatcttttgaagaataaatttggatttgatggaggtttcaactacaaggaagagcctgacctcgatgcagctttgaaaaggt |
354 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||| ||||| || || |||||||| ||||| || |||||| |||||||||||||||||| |
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|
| T |
2429115 |
cacaccaggtggatttgttgaaaaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcagctttgaaaaggt |
2429207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 354
Target Start/End: Original strand, 2435465 - 2435560
Alignment:
| Q |
259 |
tggcacacaaggtggatcttttgaagaataaatttggatttgatggaggtttcaactacaaggaagagcctgacctcgatgcagctttgaaaaggt |
354 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||||||||| ||||| || || |||||||| ||||| || |||||| ||||| |||| ||||||| |
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|
| T |
2435465 |
tggcacactaggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcaactttaaaaaggt |
2435560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 2498174 - 2498062
Alignment:
| Q |
5 |
gattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaatg---tacaaaattgagcacaatgatg |
101 |
Q |
| |
|
||||||||| ||| ||||||||||||||| | ||| ||||||||||| || ||||||||| || || ||| | |||||||||||||| ||||| |
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|
| T |
2498174 |
gattataaggaaggtgatttagtttggggattctgtaaatgggaagagtacagcttggtcccttcatctcaaatacttttcaaaattgagcacactgatg |
2498075 |
T |
|
| Q |
102 |
tcccactttccta |
114 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2498074 |
tcccactttccta |
2498062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 2505798 - 2505712
Alignment:
| Q |
268 |
aggtggatcttttgaagaataaatttggatttgatggaggtttcaactacaaggaagagcctgacctcgatgcagctttgaaaaggt |
354 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| || | |||||||| ||||||| |||||| ||||| | |||||||||| |
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|
| T |
2505798 |
aggtggatctgttgaagaataaatttggatacgatgaagccattaactacaaagaagagcaagacctcaatgcaacattgaaaaggt |
2505712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 2512456 - 2512370
Alignment:
| Q |
268 |
aggtggatcttttgaagaataaatttggatttgatggaggtttcaactacaaggaagagcctgacctcgatgcagctttgaaaaggt |
354 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| || | |||||||| ||||| | ||||| |||||||| |||||||||| |
|
|
| T |
2512456 |
aggtggatctgttgaagaataaatttggatacgatgaagccattaactacaaagaagaacaagacctggatgcagcattgaaaaggt |
2512370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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