View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_19 (Length: 485)
Name: NF8251_low_19
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 39445409 - 39445031
Alignment:
| Q |
18 |
agtgccgacagcaacaacaggctaaagatatggaccgccagagatctggataccacacctccaccccggagattcaggatttgatgtcaaggtttcttag |
117 |
Q |
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| T |
39445409 |
agtgccgacagcaacaacaggctaaagatatggaccgccagagatctggataccacatctccaccccggagattcaggatttgatgtcaaggtttcttag |
39445310 |
T |
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| Q |
118 |
gatgctagtcattttccctttgttgcttcgggtgctccctcggactctccatcaagagtatgactacctgaggttgtgtctattctattctatatagata |
217 |
Q |
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| T |
39445309 |
gatgctagtcattttccctttgttgcttccggtgctccctcggactctccatcaagagtatgactacctgaggttgtgtctattctattctatatagata |
39445210 |
T |
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| Q |
218 |
tgatcaacgttacgcagctgtttagatcactatttaacatgatatgtgtccattccaagacttgttacatgttatggccaaatgagaagattagtacatg |
317 |
Q |
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| T |
39445209 |
tgatcaacgttacgcagctgtttagatcactatttaacatgatatgtgtccattccaagacttgttacatgttatggccaaatgagaagattagtacatg |
39445110 |
T |
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| Q |
318 |
gagtgaggaaattttaggatctaaaccttggttcctctcatgacaaatggatcaacaacatatgccgaggaacaaagct |
396 |
Q |
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| T |
39445109 |
gagtgaggaaattttaggatctaaaccttggttcctctcatgacaaatggatcaacaacatatgcagaggaacaaagct |
39445031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 39444859 - 39444791
Alignment:
| Q |
397 |
tgtatttttatgcttgtatataaaggaatttattttggtatattgcacatcaaccacttgttccagacc |
465 |
Q |
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| T |
39444859 |
tgtatttttatgcttgtatataaaggaatttattttggtatattgcacatcaaccacttgttctagacc |
39444791 |
T |
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