View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8251_low_20 (Length: 475)

Name: NF8251_low_20
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8251_low_20
NF8251_low_20
[»] chr3 (2 HSPs)
chr3 (246-462)||(46258125-46258341)
chr3 (20-247)||(46257843-46258070)
[»] chr7 (3 HSPs)
chr7 (249-334)||(6755441-6755526)
chr7 (203-247)||(6755346-6755391)
chr7 (393-462)||(6755571-6755639)
[»] chr1 (3 HSPs)
chr1 (246-328)||(52975709-52975792)
chr1 (208-247)||(43899989-43900029)
chr1 (208-247)||(43904442-43904482)
[»] chr4 (3 HSPs)
chr4 (179-247)||(45018957-45019024)
chr4 (347-462)||(45020330-45020451)
chr4 (272-316)||(45019114-45019158)
[»] chr6 (1 HSPs)
chr6 (282-321)||(29868567-29868606)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 246 - 462
Target Start/End: Original strand, 46258125 - 46258341
Alignment:
Q  246 gcctagtctcttacaaccaaccaaacataaaacaaccgaatgccctcccttttccctttcagcctatatttattattctaactctctactgcagttcctg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46258125 gcctagtctcttacaaccaaccaaacataaaacaaccgaatgccctcccttttccctttcagcctatatttattattctaactctctactgcagttcctg 46258224  T
Q  346 gcttcctacagaagttacatagcagttagtgcacacacaacatcgaataataataaaataaaccgcctaactgataatacataacttctaccccgacact 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46258225 gcttcctacagaagttacatagcagttagtgcacacacaacatcgaataataataaaataaaccgcctaactgataatacataacttctaccccaacact 46258324  T
Q  446 aatttgatttctctgct 462  Q
    |||||||||||||||||    
T  46258325 aatttgatttctctgct 46258341  T

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Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 46257843 - 46258070
Alignment:
Q  20 ccatggtttaagaaatgttagattgaaaattattatcaacctttgttttattannnnnnnggcattatcaacctttggtttttaaccgcacaaagcttga 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  46257843 ccatggtttaagaaatgttagattgaaaattattatcaacctttgttttattatttttttggcattatcaacctttggtttttaaccgcacaaagcttga 46257942  T
Q  120 gaaactatgatatttgttttcttgcagcaagtataaactatagaaaataatttacggccaagtgagggatagtataaactaaatataacttatattataa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46257943 gaaactatgatatttgttttcttgcagcaagtataaactatagaaaataatttacggccaagtgagggatagtataaactaaatataacttatattataa 46258042  T
Q  220 tcaacaacactctggaataacattctgc 247  Q
    ||||||||||||||||||||||||||||    
T  46258043 tcaacaacactctggaataacattctgc 46258070  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 249 - 334
Target Start/End: Original strand, 6755441 - 6755526
Alignment:
Q  249 tagtctcttacaaccaaccaaacataaaacaaccgaatgccctcccttttccctttcagcctatatttattattctaactctctac 334  Q
    |||||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||    
T  6755441 tagtctctcacaagcaaccaagcataaaacaaccgaatgccctcctttttccctttcagcctatacttattattctacctttctac 6755526  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 6755346 - 6755391
Alignment:
Q  203 tataacttatattataatcaacaacactctg-gaataacattctgc 247  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  6755346 tataacttatattgtaaccaacaacactctgagaataacattctgc 6755391  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 462
Target Start/End: Original strand, 6755571 - 6755639
Alignment:
Q  393 taataataaaataaaccgcctaactgataatacataacttctaccccgacactaatttgatttctctgct 462  Q
    ||||| |||||||||| | | |||| ||| |||||||||||| |||| ||||||||||||||||| ||||    
T  6755571 taatagtaaaataaactgac-aactaatattacataacttctgccccaacactaatttgatttctatgct 6755639  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 246 - 328
Target Start/End: Original strand, 52975709 - 52975792
Alignment:
Q  246 gcctagtctcttacaaccaaccaaacataaaac-aaccgaatgccctcccttttccctttcagcctatatttattattctaact 328  Q
    |||||||||||  |||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52975709 gcctagtctctcccaactaaccaaacataaaaataaccgaatgccctcccttttccctttcagcctttatttattattctaact 52975792  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 43900029 - 43899989
Alignment:
Q  208 cttatattataatcaacaacactctg-gaataacattctgc 247  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  43900029 cttatattaaaatcaacaacactctgagaataacattctgc 43899989  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 43904482 - 43904442
Alignment:
Q  208 cttatattataatcaacaacactctg-gaataacattctgc 247  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  43904482 cttatattataatcaacaacacactgagaataacattctgc 43904442  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 45018957 - 45019024
Alignment:
Q  179 aagtgagggatagtataaactaaatataacttatattataatcaacaacactctggaataacattctgc 247  Q
    |||||||||||||||||  || || |||||||||||||||||||||||||||   ||||||||||||||    
T  45018957 aagtgagggatagtatatgctgaacataacttatattataatcaacaacact-gagaataacattctgc 45019024  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 462
Target Start/End: Original strand, 45020330 - 45020451
Alignment:
Q  347 cttcctacagaagttacatagcagttagtgcacacacaacatcgaataataataaaataaaccgccta------actgataatacataacttctaccccg 440  Q
    |||||||||  |||||||||||||||| |||||| |||||||  || |||||||||||  || |||||      ||| ||| |||||||||||| |  |     
T  45020330 cttcctacaacagttacatagcagttaatgcacagacaacatttaagaataataaaatgtactgcctagtgcatactaatattacataacttctgcttca 45020429  T
Q  441 acactaatttgatttctctgct 462  Q
    ||||||||||||||||| ||||    
T  45020430 acactaatttgatttctatgct 45020451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 45019114 - 45019158
Alignment:
Q  272 ataaaacaaccgaatgccctcccttttccctttcagcctatattt 316  Q
    |||||||||| ||| ||||||||||||||||||| | ||||||||    
T  45019114 ataaaacaacagaaggccctcccttttccctttcggtctatattt 45019158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 321
Target Start/End: Complemental strand, 29868606 - 29868567
Alignment:
Q  282 cgaatgccctcccttttccctttcagcctatatttattat 321  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  29868606 cgaatgccctcccttttctctttcagtctatatttattat 29868567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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