View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_22 (Length: 437)
Name: NF8251_low_22
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 26576097 - 26576509
Alignment:
| Q |
18 |
aatatttggccactagcatacaaaataactgcaacccctttagctaacaagtgagcagccatcttcgttggcctctaaacaaacttcaccttaaagttgc |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26576097 |
aatatttggccactagcatacaaaataaccgcaacccctttagctaacaagtgagcagccatcttcgttggcctccaaacaaacttcaccttaaagttgc |
26576196 |
T |
|
| Q |
118 |
aattcaagcctaatatacttctaatactagaaacaagagtgttaaactccgatgtaccttcaccactaccttcgatactgttaaacagaatttgagtgtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
26576197 |
aattcaagcctaatatacttctaatactagaaacaagagtgttaaactccgatgcaccttcacctctaccttcgatactgttaaacaaaatttgagtgtc |
26576296 |
T |
|
| Q |
218 |
agataaaaaagtgacacttgacagtccaatctcttgaacctgtctaatagcatttacgagcgccattgcctcaccttcacaaactagcagctgcggacaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26576297 |
agataaaaaagtgacacttgacagtccaatctcttgaacctgtc----agcgtttacgagcgccattgcctcaccttcacaaactagcagctgcggacaa |
26576392 |
T |
|
| Q |
318 |
ttccatcctgataaagccttcgcaaaaat---ttctaatc-ataaaaactagcatcaacgaagtattgaaactctctactagtactcactgcagacccgc |
413 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26576393 |
ttccatcctgataaagccttcgcaaaaattccttctaatcgataaaaactagcatcaacgaagtattgaaactctctactagtactcactgcagacccgc |
26576492 |
T |
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| Q |
414 |
cagccgcatctctgcta |
430 |
Q |
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|||||||||| |||||| |
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| T |
26576493 |
cagccgcatcactgcta |
26576509 |
T |
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