View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8251_low_23 (Length: 431)

Name: NF8251_low_23
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8251_low_23
NF8251_low_23
[»] chr7 (5 HSPs)
chr7 (4-314)||(698478-698785)
chr7 (146-208)||(7087349-7087411)
chr7 (150-215)||(45369121-45369186)
chr7 (307-339)||(698110-698142)
chr7 (395-431)||(698015-698052)
[»] chr5 (1 HSPs)
chr5 (140-179)||(7328691-7328730)
[»] chr3 (1 HSPs)
chr3 (148-226)||(41115422-41115499)
[»] chr1 (1 HSPs)
chr1 (140-178)||(48490552-48490590)
[»] chr2 (1 HSPs)
chr2 (122-179)||(44147985-44148042)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 314
Target Start/End: Complemental strand, 698785 - 698478
Alignment:
Q  4 catagaatggagattattaagatttgaattcatcatgcatcatataccatatcattgtcttaatgtcagaatcatatacatttatataaaaaggagtttg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  698785 catagaatggagattattaagatttgaattcatcatgcatcatataccatatcattgtcttaatgtcagaatcatatacatttatataaaaaggagtttg 698686  T
Q  104 aaaattaaatttaaatgtaaaagcaattgcagagataaaagtttcaaattctaacttcaagttaaaatcaattctacaaacaaaagcagttctacttgaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  698685 aaaattaaatttaaatgtaaaagcaattgcagagataaaagtttcatattctaacttcaagttaaaatcaattctacaaacaaaagcagttctacttgaa 698586  T
Q  204 cacatctaaacacgttaaaatcannnnnnnnataagttttcctccactagaa--------atttgagttactgttagatgcgccgcaataggagctatat 295  Q
    |||||||||||| ||||||||||            |||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||    
T  698585 cacatctaaacaagttaaaatcat-----------gttttcctccactagaacttatcctattcgagttactgttagatgcgccgcaataggagctatat 698497  T
Q  296 gaaaaccctggacatggaa 314  Q
    |||||||||||||||||||    
T  698496 gaaaaccctggacatggaa 698478  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 7087349 - 7087411
Alignment:
Q  146 ttcaaattctaacttcaagttaaaatcaattctacaaacaaaagcagttctacttgaacacat 208  Q
    ||||||||||| ||||||||||||| |||||||| |||||||| || ||||||| ||| ||||    
T  7087349 ttcaaattctagcttcaagttaaaaccaattctaaaaacaaaatcaattctactcgaaaacat 7087411  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 45369186 - 45369121
Alignment:
Q  150 aattctaacttcaagttaaaatcaattctacaaacaaaagcagttctacttgaacacatctaaaca 215  Q
    ||||||| |||||||||||||||||||||| || ||||| || ||||||||||  ||||| |||||    
T  45369186 aattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaaca 45369121  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 698142 - 698110
Alignment:
Q  307 acatggaaattgaagatgaagttggtagggtga 339  Q
    |||||||||||||||||||||||||||||||||    
T  698142 acatggaaattgaagatgaagttggtagggtga 698110  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 698052 - 698015
Alignment:
Q  395 caccgtagaaggttgcagagagg-ggggactaggattc 431  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  698052 caccgtagaaggttgcagagagggggggactaggattc 698015  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 7328691 - 7328730
Alignment:
Q  140 aaaagtttcaaattctaacttcaagttaaaatcaattcta 179  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  7328691 aaaagtttcaaattctagcttcaagttagaatcaattcta 7328730  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 41115422 - 41115499
Alignment:
Q  148 caaattctaacttcaagttaaaatcaattctacaaacaaaagcagttctacttgaacacatctaaacacgttaaaatca 226  Q
    ||||||||| |||||||| | |||||||||||||| ||||| || |||||||| || ||||| ||||| || |||||||    
T  41115422 caaattctagcttcaagt-agaatcaattctacaagcaaaatcaattctactttaaaacatccaaacatgtcaaaatca 41115499  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 48490590 - 48490552
Alignment:
Q  140 aaaagtttcaaattctaacttcaagttaaaatcaattct 178  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  48490590 aaaagtttcaaattctaacttcgagttataatcaattct 48490552  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 44147985 - 44148042
Alignment:
Q  122 aaaagcaattgcagagataaaagtttcaaattctaacttcaagttaaaatcaattcta 179  Q
    |||| ||||||| |||||||||| |  ||| ||||||||||||||| |||||||||||    
T  44147985 aaaatcaattgcggagataaaagctctaaactctaacttcaagttataatcaattcta 44148042  T

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