View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_28 (Length: 382)
Name: NF8251_low_28
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 6855238 - 6855057
Alignment:
| Q |
14 |
agagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcga |
113 |
Q |
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| T |
6855238 |
agagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcga |
6855139 |
T |
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| Q |
114 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggat |
195 |
Q |
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| T |
6855138 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggat |
6855057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 62 - 297
Target Start/End: Original strand, 6823024 - 6823258
Alignment:
| Q |
62 |
tgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatc |
161 |
Q |
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| T |
6823024 |
tgcatattgtagtattttatgtggaggcgctgttagagaaagaatcattcgagctttcttggttgaagagaaaaagatagtcaagaatgttctgaagatc |
6823123 |
T |
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| Q |
162 |
caaaagacaaaggaaaaacaagctttgaagggatgaattttatgaaaggagatacatatctttttggaggagttttaggtttgagtga-tatagtacaag |
260 |
Q |
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| T |
6823124 |
cgaaagagaaaggaaaaacaagctttgaagggatgaattttatgaaaggag--acatatcttttcagaggaattttaggtttgagtgattatagtacaag |
6823221 |
T |
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| Q |
261 |
cacaaaattcattagagttgtttcctttgttaatttt |
297 |
Q |
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| T |
6823222 |
cacaaaatttattagagttgttccctttgtgaatttt |
6823258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 248 - 360
Target Start/End: Complemental strand, 6855059 - 6854947
Alignment:
| Q |
248 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttgtataaataagggaagaaaatgatagagagaaccatctttgaacgttgta |
347 |
Q |
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| T |
6855059 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttgtataaataagggaagaaaatgatagagagaaccatctttgaacgttgta |
6854960 |
T |
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| Q |
348 |
gtatttcctaatg |
360 |
Q |
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| T |
6854959 |
gtatttcctaatg |
6854947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 114 - 282
Target Start/End: Original strand, 24245690 - 24245859
Alignment:
| Q |
114 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggatgaattttatgaaaggaga |
213 |
Q |
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||||||||||||||| |||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||| | | ||| || ||| |||| |
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| T |
24245690 |
gctttcttggttgaagagcaaaagatcgtcaagaaagtcttgaagatccaaaagacaaaggaaaagcaagctttgaagggttaagtttcattaaacgaga |
24245789 |
T |
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| Q |
214 |
tacatatctttttggaggagttttaggtttgagtga-tatagtacaagcacaaaattcattagagttgtt |
282 |
Q |
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| T |
24245790 |
taaagatctttttggaggagttttaggtttgagtgattatagtaaaagcacaaaatttattagagctgtt |
24245859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 24244979 - 24245067
Alignment:
| Q |
15 |
gagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaag |
103 |
Q |
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| T |
24244979 |
gagtacaagagatctaggttacctagaaacaggaggactgtgaatcgtgcctatggtggagttttatctggaggtgctgttagagaaag |
24245067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 2418914 - 2418844
Alignment:
| Q |
114 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagc |
184 |
Q |
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|||||| | |||||| ||||||| ||||| ||||| |||||||||||||| || ||||| ||||| ||||| |
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| T |
2418914 |
gctttccttgttgaagagcaaaaaatagttaagaaagttttgaagatccagaaaacaaaagaaaagcaagc |
2418844 |
T |
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