View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_30 (Length: 369)
Name: NF8251_low_30
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 350
Target Start/End: Original strand, 14455963 - 14456307
Alignment:
| Q |
6 |
agtagcagagacaaactgggttagtgcattaagccaatttccatttttaatagaattgcacctatctttctgtcaactttttggtcatattccatctccc |
105 |
Q |
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| T |
14455963 |
agtagcagaaacaaactgggttagttcattaagccaatttccttttttaatagaattgcatctacatttctgtcagctttttggtcatattccatctccc |
14456062 |
T |
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| Q |
106 |
ccatctcacaattttacttcacttgctattctagatcttagcactaataactttgcttcaaagatacctgaatggcttactaatattagcaccctacaac |
205 |
Q |
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| T |
14456063 |
ccgtctcacaattttacttcacttgctgttctagatcttagtattaatagctttgtttccaagatacccgattggcttactaatattagcaccctacaac |
14456162 |
T |
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| Q |
206 |
aaatcgacataggaaacagtggtctgtatggccaaataccacttggtttaagagacctaccaaagctacaatatttgaacttatgggacaaccaaaatct |
305 |
Q |
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| T |
14456163 |
aaatcgacataggaaacagtggtctgtatggacaaataccacttggtttaagagacctaccaaagctacaatatttgaacttatgggacaaccaaaatct |
14456262 |
T |
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| Q |
306 |
cacagcaaattgttctcaactcttcatgagaggatgggaaaagac |
350 |
Q |
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| T |
14456263 |
cacagcaaattgttctcaactcttcatgagaggatgggaaaagac |
14456307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 59 - 342
Target Start/End: Complemental strand, 14470913 - 14470630
Alignment:
| Q |
59 |
aattgcacctatctttctgtcaactttttggtcatattccatctcccccatctcacaattttacttcacttgctattctagatcttagcactaataactt |
158 |
Q |
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| T |
14470913 |
aattgcatctatcttcttgcaaactttttggtcatattccatcccccacatctctcaattttacttcacttgctgttttagatcttagttctaataactt |
14470814 |
T |
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| Q |
159 |
tgcttcaaagatacctgaatggcttactaatattagcaccctacaacaaatcgacataggaaacagtggtctgtatggccaaataccacttggtttaaga |
258 |
Q |
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| T |
14470813 |
tgtttcaaagatacctgattgggttgtaaatattagcaccctaacacatattgacataagcagtggtggtttgtatggaaaaataccacttggtttaaga |
14470714 |
T |
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| Q |
259 |
gacctaccaaagctacaatatttgaacttatgggacaaccaaaatctcacagcaaattgttctcaactcttcatgagaggatgg |
342 |
Q |
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| T |
14470713 |
gacctaccaaacttaaagtttttgagtttagggggtaatggaaatctcacagccaattgttctcaactcttcatgagaggatgg |
14470630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 346
Target Start/End: Complemental strand, 14495386 - 14495047
Alignment:
| Q |
7 |
gtagcagagacaaactgggttagtgcattaagccaatttccatttttaatagaattgcacctatctttctgtcaactttttggtcatattccatctcccc |
106 |
Q |
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| T |
14495386 |
gtagcaggaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatcttcttgccatctttttggccaaatttcatctcctt |
14495287 |
T |
|
| Q |
107 |
catctcacaattttacttcacttgctattctagatcttagcactaataactttgcttcaaagatacctgaatggcttactaatattagcaccctacaaca |
206 |
Q |
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| T |
14495286 |
catctctcaattttacttcacttgcttttctaaatcttagttctaatgcttttttttccaagatacctaattggctagttaatattagcaccttagaaca |
14495187 |
T |
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| Q |
207 |
aatcgacataggaaacagtggtctgtatggccaaataccacttggtttaagagacctaccaaagctacaatatttgaacttatgggacaaccaaaatctc |
306 |
Q |
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| T |
14495186 |
tattgacatgagaaatagtggtttctatggaacaataccacttggtttaagagaccttcctaagttatggtatttggatttaggctttaactacaatctc |
14495087 |
T |
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| Q |
307 |
acagcaaattgttctcaactcttcatgagaggatgggaaa |
346 |
Q |
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| T |
14495086 |
atagcaagttgttctcaactcttcatgaaaggatgggaaa |
14495047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 14460453 - 14460645
Alignment:
| Q |
6 |
agtagcagagacaaactgggttagtgcattaagccaatttccatttttaatagaattgcacctatctttctgtcaactttttggtcatattccatctccc |
105 |
Q |
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|||||||| ||| ||| |||||||||| ||| ||| |||| ||||||||||||||||| ||||||| || || |||||||| || ||| ||||||| |
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| T |
14460453 |
agtagcaggaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgcatctatcttcttgccatctttttggccaaatttcatctcct |
14460552 |
T |
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| Q |
106 |
ccatctcacaattttacttcacttgctattctagatcttagcactaataactttgcttcaaagatacctgaatggcttactaatattagcacc |
198 |
Q |
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| T |
14460553 |
tcatctctcaattttacttcacttgcttttctaaaccttagttctaatgcttttttttccaagatacctaattggcttgttaatattagcacc |
14460645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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