View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_31 (Length: 366)
Name: NF8251_low_31
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 169 - 350
Target Start/End: Complemental strand, 34686632 - 34686451
Alignment:
| Q |
169 |
aatagagaaggcttaggtttatttagaaggatatttaaataatatcattctaaggatattattttcattttttcttcttgttgagctcacaaccattcac |
268 |
Q |
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| T |
34686632 |
aatagagaagtcttaggtttatttagaaggatatttaaataatatcattctaaggatattattttcattttttcttcttgttgagctcacagccattcac |
34686533 |
T |
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| Q |
269 |
tagcatcggacatgggattggaagatttagtgtgttactcgaactctctgctgtctgtcaatctcatatcagtagaggtttc |
350 |
Q |
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| T |
34686532 |
tagcatcggacatgggattggaagatttagtgtgttactcgaactctctgctgtctgtcaatctcataccagtagaggtttc |
34686451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 34686727 - 34686658
Alignment:
| Q |
75 |
tatatttaaggttaggcttgcttacatagacatacgacctaacctgcgaaaaatccatgtcaggatttga |
144 |
Q |
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| T |
34686727 |
tatatttaaggttaggcttgcttacatagacatacgacctaacctgcgaaaaatccatgtcaggatttga |
34686658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 32723674 - 32723592
Alignment:
| Q |
268 |
ctagcatcggacatgggattggaagatttagtgtgttactcgaactctctgctgtctgtcaatctcatatcagtagaggtttc |
350 |
Q |
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| T |
32723674 |
ctagcatcggacatgtgattggaagacttagtatgttactcagactctctgctgtccgtcaatctcattttagtagaggtttc |
32723592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 26983828 - 26983781
Alignment:
| Q |
220 |
aaggatattattttcattttttcttcttgttgagctcacaaccattca |
267 |
Q |
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| T |
26983828 |
aaggatattattttcattttttcttcttgttgagctcacagccattca |
26983781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 26983760 - 26983711
Alignment:
| Q |
281 |
tgggattggaagatttagtgtgttactcgaactctctgctgtctgtcaat |
330 |
Q |
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| T |
26983760 |
tgggattggaagatttagtctgttacttggactctctgctgtccgtcaat |
26983711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 26983854 - 26983820
Alignment:
| Q |
169 |
aatagagaaggcttaggtttatttagaaggatatt |
203 |
Q |
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| T |
26983854 |
aatagagaaggcttaggtttgtttagaaggatatt |
26983820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 26984653 - 26984615
Alignment:
| Q |
83 |
aggttaggcttgcttacatagacatacgacctaacctgc |
121 |
Q |
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| T |
26984653 |
aggttaggcttgcttatatggacatacgacctaacctgc |
26984615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 30226995 - 30226953
Alignment:
| Q |
169 |
aatagagaaggcttaggtttatttagaaggatatttaaataat |
211 |
Q |
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||||||||||||||| |||| ||||||||||||||||| |||| |
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| T |
30226995 |
aatagagaaggcttaagtttgtttagaaggatatttaagtaat |
30226953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 30227069 - 30227011
Alignment:
| Q |
86 |
ttaggcttgcttacatagacatacgacctaacctgcgaaaaatccatgtcaggatttga |
144 |
Q |
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||||||||||||||||| | |||||| ||||||||||| ||||| ||| ||||| |||| |
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| T |
30227069 |
ttaggcttgcttacatacagatacgagctaacctgcgataaatctatgccaggacttga |
30227011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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