View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8251_low_33 (Length: 361)

Name: NF8251_low_33
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8251_low_33
NF8251_low_33
[»] chr8 (4 HSPs)
chr8 (34-344)||(32528676-32528986)
chr8 (39-344)||(26344886-26345191)
chr8 (109-212)||(19968638-19968741)
chr8 (109-212)||(21024068-21024171)
[»] chr1 (6 HSPs)
chr1 (15-344)||(6831467-6831796)
chr1 (115-346)||(26404470-26404701)
chr1 (124-343)||(28599266-28599485)
chr1 (109-212)||(20782887-20782990)
chr1 (109-212)||(29472882-29472985)
chr1 (82-212)||(45995212-45995342)
[»] chr4 (2 HSPs)
chr4 (34-344)||(28394463-28394773)
chr4 (115-346)||(1544837-1545068)
[»] chr6 (3 HSPs)
chr6 (115-346)||(7037541-7037772)
chr6 (109-212)||(26054498-26054601)
chr6 (109-212)||(26074551-26074654)
[»] chr5 (2 HSPs)
chr5 (115-346)||(17796959-17797190)
chr5 (97-209)||(20330679-20330791)
[»] chr7 (3 HSPs)
chr7 (115-346)||(30506279-30506508)
chr7 (269-344)||(35933528-35933603)
chr7 (109-212)||(29871319-29871422)
[»] chr2 (1 HSPs)
chr2 (81-342)||(43373247-43373507)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 34 - 344
Target Start/End: Original strand, 32528676 - 32528986
Alignment:
Q  34 gacaacgattggggaggttctgctgatgaaatgaaaaacacttatggctattgtttcacacttggttctagtgttttcttttggagttcgaaaaaacaag 133  Q
    |||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32528676 gacagcgattggggaggttctgctgatgatatgaaaagcacttctggctattgtttcacacttggttctagtgttttctcttggagttcgaaaaaacaag 32528775  T
Q  134 aaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctgagaaagatattgagtgaccttcatct 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528776 aaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctgagaaagatattgagtgaccttcatct 32528875  T
Q  234 tgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttttcacgaaaaaaccaagcatttcaacatc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32528876 tgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttttcacggaaaaaccaagcatttcaacatc 32528975  T
Q  334 aaattgttttt 344  Q
    |||||||||||    
T  32528976 aaattgttttt 32528986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 39 - 344
Target Start/End: Original strand, 26344886 - 26345191
Alignment:
Q  39 cgattggggaggttctgctgatgaaatgaaaaacacttatggctattgtttcacacttggttctagtgttttcttttggagttcgaaaaaacaagaaaca 138  Q
    |||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26344886 cgattgaggaggttctgctgatgatatgaaaagcacttctggctattgtttcacacttggttctagtgttttctcttggagttcgaaaaaacaagaaaca 26344985  T
Q  139 gtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctgagaaagatattgagtgaccttcatcttgacc 238  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26344986 gtggctcaatcaactgctgaagcggagtttattgttgcaacggctgctgttaatcaagctatgtggctgagaaagatattgagtgaccttcatcttgacc 26345085  T
Q  239 acaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttttcacgaaaaaaccaagcatttcaacatcaaatt 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||    
T  26345086 acaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatctagtttttcaaggaaaaaccaagcatttcaacatcaaatt 26345185  T
Q  339 gttttt 344  Q
    ||||||    
T  26345186 gttttt 26345191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 19968638 - 19968741
Alignment:
Q  109 ttcttttggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctga 208  Q
    |||| ||||||||| |||||||||||||  || || |||||||| |||||||| ||||||||||| || || || ||||||||||| ||  ||||||| |    
T  19968638 ttctcttggagttcaaaaaaacaagaaattgttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaa 19968737  T
Q  209 gaaa 212  Q
    ||||    
T  19968738 gaaa 19968741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 21024171 - 21024068
Alignment:
Q  109 ttcttttggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctga 208  Q
    |||| ||||||||| |||||||||||||  || || |||||||| |||||||| ||||||||||| || || || ||||||||||| ||  ||||||| |    
T  21024171 ttctcttggagttcaaaaaaacaagaaattgttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaa 21024072  T
Q  209 gaaa 212  Q
    ||||    
T  21024071 gaaa 21024068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 344
Target Start/End: Complemental strand, 6831796 - 6831467
Alignment:
Q  15 ggcccgatattttgaatgtgacaacgattggggaggttctgctgatgaaatgaaaaacacttatggctattgtttcacacttggttctagtgttttcttt 114  Q
    |||| ||||||||||||| |||| | |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |    
T  6831796 ggcctgatattttgaatgcgacagcaattggggaggttctgctgatgatatgaaaagcacttctggctattgtttcacacttggttctagtgttttctct 6831697  T
Q  115 tggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctgagaaaga 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  6831696 tggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgttgcaacgtctgctgttaatcaagctatgtggctgagaaaga 6831597  T
Q  215 tattgagtgaccttcatcttgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttttcacgaaaa 314  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||    
T  6831596 tattgagttaccttcatcttgaccacaaagaagccactaagatctttgttgataatcaagcttcaatagctatttctcataatccaatttttcacggaaa 6831497  T
Q  315 aaccaagcatttcaacatcaaattgttttt 344  Q
    ||||||||||||||||||||||||||||||    
T  6831496 aaccaagcatttcaacatcaaattgttttt 6831467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 115 - 346
Target Start/End: Original strand, 26404470 - 26404701
Alignment:
Q  115 tggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctgagaaaga 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||| ||||||||| | ||| |||| ||||    
T  26404470 tggagttcaaaaaaacaagaaacagtggctcaatcaactgctgaagcggaatttgttgctgctactgctgctgtaaatcaagctctatggttgaggaaga 26404569  T
Q  215 tattgagtgaccttcatcttgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttttcacgaaaa 314  Q
    |||||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||    
T  26404570 tattgagtgatcttcatcttgagcagaaagaagacactaagatctttgttgataatcaagctgcaatagctatttcccataatccggtttttcatggaaa 26404669  T
Q  315 aaccaagcatttcaacatcaaattgttttttg 346  Q
    ||| || ||||||||||||||  |||||||||    
T  26404670 aactaaacatttcaacatcaagctgttttttg 26404701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 124 - 343
Target Start/End: Complemental strand, 28599485 - 28599266
Alignment:
Q  124 aaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctgagaaagatattgagtg 223  Q
    ||||||||||||| |||||||||||| |||||  |||| |||||| |||||||||  |||||||| |||||||||||| |||||| |||||||||| |||    
T  28599485 aaaaaacaagaaatagtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacaaagatattgcgtg 28599386  T
Q  224 accttcatcttgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttttcacgaaaaaaccaagca 323  Q
    | ||||||||||| || ||||||  || || ||| |||||||||||||||| ||||||||||||||| || ||| |||||||||||| | ||||||||||    
T  28599385 atcttcatcttgagcagaaagaacacaataggatttttgttgataatcaagttgcaatagctatttcccacaattcagtttttcacggagaaaccaagca 28599286  T
Q  324 tttcaacatcaaattgtttt 343  Q
    ||||||||||||| ||||||    
T  28599285 tttcaacatcaaactgtttt 28599266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 20782990 - 20782887
Alignment:
Q  109 ttcttttggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctga 208  Q
    |||| ||||||||| |||||||||||||  || || |||||||| |||||||| ||||||||||| || || || ||||||||||| ||  ||||||| |    
T  20782990 ttctcttggagttcaaaaaaacaagaaattgttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaa 20782891  T
Q  209 gaaa 212  Q
    ||||    
T  20782890 gaaa 20782887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 29472882 - 29472985
Alignment:
Q  109 ttcttttggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctga 208  Q
    |||| ||||||||| |||||||||||||  || || |||||||| |||||||| ||||||||||| || || || ||||||||||| ||  ||||||| |    
T  29472882 ttctcttggagttcaaaaaaacaagaaattgttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaa 29472981  T
Q  209 gaaa 212  Q
    ||||    
T  29472982 gaaa 29472985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 45995342 - 45995212
Alignment:
Q  82 tattgtttcacacttggttctagtgttttcttttggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacgg 181  Q
    |||||||| ||||||||||||||  | || | ||||  ||| || |||||||| |  || || || |||||||| |||||||| || ||||||||  | |    
T  45995342 tattgttttacacttggttctagaatgttttcttggtcttcaaagaaacaagatattgtagcacagtcaactgcagaagcggaattcattgctgctgctg 45995243  T
Q  182 ctgctgttaatcaagctatgtggctgagaaa 212  Q
    | ||||||||||||||| |||||||||||||    
T  45995242 cagctgttaatcaagctttgtggctgagaaa 45995212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 34 - 344
Target Start/End: Original strand, 28394463 - 28394773
Alignment:
Q  34 gacaacgattggggaggttctgctgatgaaatgaaaaacacttatggctattgtttcacacttggttctagtgttttcttttggagttcgaaaaaacaag 133  Q
    |||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  28394463 gacagcgattggggaggttctgctgatgatatgaaaagcacttctggctattgtttctcactaggttctagtgttttctcttggagttcgaaaaaacaag 28394562  T
Q  134 aaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctgagaaagatattgagtgaccttcatct 233  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28394563 aaacagtggctcaatcaactgccgaagcggagtttattgctgcaacggctgctgttaatcaagctacgtggctgagaaagatattgagtgaccttcatct 28394662  T
Q  234 tgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttttcacgaaaaaaccaagcatttcaacatc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28394663 tgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttttcacggaaaaaccaagcatttcaacatc 28394762  T
Q  334 aaattgttttt 344  Q
    |||||||||||    
T  28394763 aaattgttttt 28394773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 115 - 346
Target Start/End: Original strand, 1544837 - 1545068
Alignment:
Q  115 tggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctgagaaaga 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||| ||||||||| | ||| |||| ||||    
T  1544837 tggagttcaaaaaaacaagaaacagtggctcaatcaactgctgaagcggaatttgttgctgctactgctgctgtaaatcaagctctatggttgaggaaga 1544936  T
Q  215 tattgagtgaccttcatcttgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttttcacgaaaa 314  Q
    |||||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||    
T  1544937 tattgagtgatcttcatcttgagcagaaagaagacactaagatctttgttgataatcaagctgcaatagctatttcccataatccggtttttcatggaaa 1545036  T
Q  315 aaccaagcatttcaacatcaaattgttttttg 346  Q
    ||| || ||||||||||||||  |||||||||    
T  1545037 aactaaacatttcaacatcaagctgttttttg 1545068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 115 - 346
Target Start/End: Original strand, 7037541 - 7037772
Alignment:
Q  115 tggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctgagaaaga 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||| ||||||||| | ||| |||| ||||    
T  7037541 tggagttcaaaaaaacaagaaacagtggctcaatcaactgctgaagcggaatttgttgctgctactgctgctgtaaatcaagctctatggttgaggaaga 7037640  T
Q  215 tattgagtgaccttcatcttgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttttcacgaaaa 314  Q
    |||||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||    
T  7037641 tattgagtgatcttcatcttgagcataaagaagacactaagatctttgttgataatcaagctgcaatagctatttcccataatccggtttttcatggaaa 7037740  T
Q  315 aaccaagcatttcaacatcaaattgttttttg 346  Q
    ||| || ||||||||||||||  |||||||||    
T  7037741 aactaaacatttcaacatcaagctgttttttg 7037772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 26054498 - 26054601
Alignment:
Q  109 ttcttttggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctga 208  Q
    |||| ||||||||| |||||||||||||  || || |||||||| |||||||| ||||||||||| || || || ||||||||||| ||  ||||||| |    
T  26054498 ttctcttggagttcaaaaaaacaagaaattgttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaa 26054597  T
Q  209 gaaa 212  Q
    ||||    
T  26054598 gaaa 26054601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 26074551 - 26074654
Alignment:
Q  109 ttcttttggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctga 208  Q
    |||| ||||||||| |||||||||||||  || || |||||||| |||||||| ||||||||||| || || || ||||||||||| ||  ||||||| |    
T  26074551 ttctcttggagttcaaaaaaacaagaaattgttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaa 26074650  T
Q  209 gaaa 212  Q
    ||||    
T  26074651 gaaa 26074654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 115 - 346
Target Start/End: Original strand, 17796959 - 17797190
Alignment:
Q  115 tggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctgagaaaga 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||| ||||||||| | ||| |||| ||||    
T  17796959 tggagttcaaaaaaacaagaaacagtggctcaatcaactgctgaagcggaatttgttgctgctactgctgctgtaaatcaagctctatggttgaggaaga 17797058  T
Q  215 tattgagtgaccttcatcttgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttttcacgaaaa 314  Q
    |||||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||    
T  17797059 tattgagtgatcttcatcttgagcagaaagaagacactaagatctttgttgataatcaagctgcaatagctatttcccataatccggtttttcatggaaa 17797158  T
Q  315 aaccaagcatttcaacatcaaattgttttttg 346  Q
    ||| || ||||||||||||||  |||||||||    
T  17797159 aactaaacatttcaacatcaagctgttttttg 17797190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 20330791 - 20330679
Alignment:
Q  97 ggttctagtgttttcttttggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaag 196  Q
    ||||| |||||||||| |||| |||| || ||||||||    || ||||| ||||| || ||||| |||||| | |||||||| || ||||| |||||||    
T  20330791 ggttcaagtgttttctcttggtgttcaaagaaacaagaggttgtagctcagtcaacagcagaagctgagtttgtagctgcaacagcagctgtaaatcaag 20330692  T
Q  197 ctatgtggctgag 209  Q
    |||| ||| ||||    
T  20330691 ctatttggttgag 20330679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 115 - 346
Target Start/End: Complemental strand, 30506508 - 30506279
Alignment:
Q  115 tggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctgagaaaga 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| | ||  ||||||| ||||||||| | ||| |||| ||||    
T  30506508 tggagttcaaaaaaacaagaaacagtggctcaatcaactgctgaagcggaatttgttgctactacttctgctgtaaatcaagctctatggttgaggaaga 30506409  T
Q  215 tattgagtgaccttcatcttgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttttcacgaaaa 314  Q
    | |||||||| ||||||||||| || ||||||| || ||  || |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||    
T  30506408 ttttgagtgatcttcatcttgagcagaaagaagacatta--atatttgttgataatcaagctgcaatagctatttcccataatccagtttttcatggaaa 30506311  T
Q  315 aaccaagcatttcaacatcaaattgttttttg 346  Q
    ||| || ||||||||||||||  |||||||||    
T  30506310 aactaaacatttcaacatcaagctgttttttg 30506279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 269 - 344
Target Start/End: Complemental strand, 35933603 - 35933528
Alignment:
Q  269 atcaagctgcaatagctatttctcataatccagtttttcacgaaaaaaccaagcatttcaacatcaaattgttttt 344  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35933603 atcaggctgcaatagctatttctcataatccagtttttcacggaaaaaccaagcatttcaacatcaaattgttttt 35933528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 29871319 - 29871422
Alignment:
Q  109 ttcttttggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctga 208  Q
    |||| ||||||||| |||||||||||||  || || |||||||| |||||||| ||||||||||| || || || ||||||||||| ||  ||||||| |    
T  29871319 ttctcttggagttcaaaaaaacaagaaattgttgcacaatcaacagctgaagcagagtttattgcagccacagcagctgttaatcaggccttgtggctaa 29871418  T
Q  209 gaaa 212  Q
    ||||    
T  29871419 gaaa 29871422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 81 - 342
Target Start/End: Original strand, 43373247 - 43373507
Alignment:
Q  81 ctattgtttcacacttggttctagtgttttcttttggagttcgaaaaaacaagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacg 180  Q
    ||||||||| |||||||||| | |  ||| || ||||||||  ||||||||||  |  ||||||||||| ||||| ||||  |||||| ||| ||||||     
T  43373247 ctattgttttacacttggttatggcatttactcttggagtta-aaaaaacaagccatggtggctcaatctactgccgaagtagagtttgttgttgcaact 43373345  T
Q  181 gctgctgttaatcaagctatgtggctgagaaagatattgagtgaccttcatcttgaccacaaagaagccactaagatctttgttgataatcaagctgcaa 280  Q
    | |||||| | |||||||||||||||||||||||||||   ||| ||||||||||| |||||||||| ||||||||| ||||||||||||||| | |||     
T  43373346 gttgctgtaagtcaagctatgtggctgagaaagatattagatgatcttcatcttgagcacaaagaagacactaagatatttgttgataatcaaaccgcag 43373445  T
Q  281 tagctatttctcataatccagtttttcacgaaaaaaccaagcatttcaacatcaaattgttt 342  Q
      ||||||||||  |||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  43373446 aggctatttctcgcaatccaatttttcacggaaaaacctagcatttcaacatcaaattgttt 43373507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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