View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_34 (Length: 359)
Name: NF8251_low_34
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 12957169 - 12957511
Alignment:
| Q |
1 |
gatgcacctactgggatagcctatacttcacaaaatcaatctgtggcagcatttgtggcagcagaaaaagcagcattttatcattgtgcattttacagta |
100 |
Q |
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| T |
12957169 |
gatgcacctacaggagttgcctatacttcacaaaatcaatctgtggcagcatttgtggcagcagagaaagctgcattttatcattgtgcattttacagta |
12957268 |
T |
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| Q |
101 |
cacacaacacactctttgattacaaaggtagacattactatgagtcttgttacattcaaggctccattgatttcatatttggtcgtggcagaaccatctt |
200 |
Q |
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| T |
12957269 |
cacacaacacactctttgattacaaaggtagacattactatgagtcttgttacattcaaggctccattgatttcatatttggtcgtggcagaaccatctt |
12957368 |
T |
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| Q |
201 |
ccaagtgagtttattgtcacatctcttttatatatcgtgacttaattttcataaatatttattaatgattatgatttttcttatgcagaattgtgagata |
300 |
Q |
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| T |
12957369 |
ccaagtgagtttattgtcacatctcttttatatatcatgacttaattttcataaatatttattaatgattatgatttttcttatgcagaattgtgagata |
12957468 |
T |
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| Q |
301 |
tttgtggttgatgacaaaaggatatcaattcgtgggtcaatta |
343 |
Q |
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| T |
12957469 |
tttgtggttgatgacaaaaggatatcaattcgtgggtcaatta |
12957511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 14241801 - 14241548
Alignment:
| Q |
1 |
gatgcacctactgggatagcctatacttcacaaaatcaatctgtggcagcatttgtggcagcagaaaaagcagcattttatcattgtgcattttacagta |
100 |
Q |
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| T |
14241801 |
gatgcacctactgggatagcctatacttcacaaaatcaatatgtggcagca------------gaaaaagcagcattttatcattgtgcattttatagtt |
14241714 |
T |
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| Q |
101 |
cacacaacacactctttgattacaaaggtagacattactatgagtc---ttgttacattcaaggctccattgatttcatatttggtcgtggcagaaccat |
197 |
Q |
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| T |
14241713 |
cacacaacacgctctttgattacaaaggaagacattactacgagtcttgttgttacattcaaggttccattgatttcatatttggtcgtggcagaaccat |
14241614 |
T |
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| Q |
198 |
cttccaagtgagtttattgtcacatctcttttatatatcgtgacttaattttcataaatatttatt |
263 |
Q |
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| T |
14241613 |
cttccaagtgagttcattttcttatctattttctacatccttacttaattttcataaatatttatt |
14241548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 14241535 - 14241442
Alignment:
| Q |
251 |
ataaatatttattaatgattatgattt-ttcttatgcagaattgtgagatatttgtggttgatgacaaaaggatatcaattcgtgggtcaatta |
343 |
Q |
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| T |
14241535 |
ataaatatttattaatgattatgatttatttttatgcagaattgtgagatatttgtggttgatgacaaaaggatattaattcgtgggtcaatta |
14241442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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