View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_37 (Length: 343)
Name: NF8251_low_37
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_37 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 9439160 - 9439502
Alignment:
| Q |
1 |
gaaaaagtagtagtatcagtgtcaggctgtcagctgaaacctaaatcaggttgacaacataacatttttgggctctataggaatggaaatcgacccagca |
100 |
Q |
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| T |
9439160 |
gaaaaagtagtagtatcagtgtcaggctgtcagctgaaacctaaatcaggttgacaacataacatttttgggctctataggaatggaaatcgacccagca |
9439259 |
T |
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| Q |
101 |
cttacgttcaactttcacctcgtccttcaatccattcataatgactccagtgagttcagccaggaaaggttcactaggaatgtctccccgaacaagaaga |
200 |
Q |
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| T |
9439260 |
cttacgttcaactttcacctcgtccttcaatccattcatactgactccagtgagttcagccaggaaaggttcactaggaatgtctccccgaacaagaaga |
9439359 |
T |
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| Q |
201 |
atcatgggaacactatatcttgccaatttcaaccttgcagacaaaataagtcttgtttgggacatgctgatagagccatgaatgagatatatacaatgag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9439360 |
atcatgggaacactatatcttgccaatttcaaccttgcagacaaaataagtcttgtttgggacatgctgatagagccatgaatgagatctatacaatgag |
9439459 |
T |
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| Q |
301 |
aatttgatgaaggttcgcctgaaaagaattttagaccagatat |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9439460 |
aatttgatgaaggttcgcctgaaaagaattttagaccagatat |
9439502 |
T |
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