View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_40 (Length: 325)
Name: NF8251_low_40
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 14953380 - 14953698
Alignment:
| Q |
1 |
tctttttctttcactcttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctc |
100 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14953380 |
tctttttctttcacacttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctc |
14953479 |
T |
|
| Q |
101 |
acctacaactgctttctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctc |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14953480 |
acctaccactgctttctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctc |
14953579 |
T |
|
| Q |
201 |
agattccgatcaccaactgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccac |
300 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14953580 |
agattccgatcactgactgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccac |
14953679 |
T |
|
| Q |
301 |
ttctactgtcaccaccaaa |
319 |
Q |
| |
|
|||| |||||||||||||| |
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| T |
14953680 |
ttctgctgtcaccaccaaa |
14953698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 4561740 - 4561422
Alignment:
| Q |
1 |
tctttttctttcactcttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4561740 |
tctttttctttcacacttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctc |
4561641 |
T |
|
| Q |
101 |
acctacaactgctttctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctc |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4561640 |
acctaccactgctttctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccacttctgcaaacgacctgcaactctc |
4561541 |
T |
|
| Q |
201 |
agattccgatcaccaactgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccac |
300 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4561540 |
agattcagatcaccgactgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccac |
4561441 |
T |
|
| Q |
301 |
ttctactgtcaccaccaaa |
319 |
Q |
| |
|
|||| |||||||||||||| |
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|
| T |
4561440 |
ttctgctgtcaccaccaaa |
4561422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 5370510 - 5370828
Alignment:
| Q |
1 |
tctttttctttcactcttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctc |
100 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
5370510 |
tctttttcttacacacttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctc |
5370609 |
T |
|
| Q |
101 |
acctacaactgctttctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctc |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5370610 |
acctaccactgctttctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttcctcttctgcaaacgacctgcaactctc |
5370709 |
T |
|
| Q |
201 |
agattccgatcaccaactgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccac |
300 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5370710 |
agattctgatcactgactgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccac |
5370809 |
T |
|
| Q |
301 |
ttctactgtcaccaccaaa |
319 |
Q |
| |
|
|||| |||||||||||||| |
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|
| T |
5370810 |
ttctgctgtcaccaccaaa |
5370828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 46697047 - 46697010
Alignment:
| Q |
121 |
tcttctccgatcagcttagatctgaccaccaccaacaa |
158 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
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| T |
46697047 |
tcttctccgatcagctcagatctgaccaccaccaacaa |
46697010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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