View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_41 (Length: 322)
Name: NF8251_low_41
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 2 - 305
Target Start/End: Complemental strand, 41241776 - 41241473
Alignment:
| Q |
2 |
agcctgatcaatcacaatgaccaatatagatattaaggcgacacctatgtggaatatgaacccttgaaacttgaactgggaacaacatagatccaagtat |
101 |
Q |
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| T |
41241776 |
agcctgatcaatcacaatgaccaatatagatattaaggcgacacctatgtagaatatgaacccttgaaacttgaactgggaacaacatagatccaagtat |
41241677 |
T |
|
| Q |
102 |
catgagcatgaatcaggtacctacctattaagtcccccggagtacaaccttgacgaatacacagtcaacaacaaaaataaacaaattaacctaaacataa |
201 |
Q |
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| T |
41241676 |
catgagcatgaatcaggtacgtacctattcagtcccccggagtacaaccttgacgaatacacagtcaacaacaaaaataagca----aacctaaacataa |
41241581 |
T |
|
| Q |
202 |
tgggaaggacccaaaaacaaa----catgtttagaggccaaggtaatgtggcagccctgctgcctatctgcataaactcaaaccttcagacgtcaaggag |
297 |
Q |
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| T |
41241580 |
tgggaaggacccaaaaacaaacatgcatgtttagaggccaaggtaatgtggcagccctgctgcctatctgcataaactcaaaccttcagacgtcaaggag |
41241481 |
T |
|
| Q |
298 |
gcataact |
305 |
Q |
| |
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|||||||| |
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| T |
41241480 |
gcataact |
41241473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 41246003 - 41246072
Alignment:
| Q |
5 |
ctgatcaatcacaatgaccaatatagatattaaggcgacacctatgtggaatatgaacccttgaaacttg |
74 |
Q |
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|||| |||||||||||||||||| || |||||||||||| || ||||| || ||||||||||||||||| |
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| T |
41246003 |
ctgagcaatcacaatgaccaatagaggtattaaggcgacgccgatgtgaaacctgaacccttgaaacttg |
41246072 |
T |
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