View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_43 (Length: 319)
Name: NF8251_low_43
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 25 - 308
Target Start/End: Complemental strand, 14743765 - 14743483
Alignment:
| Q |
25 |
gaagtatccggcctgactatcgaggagaaggctcgcctgatcaaatcaaccttctccgaagcagagataaaacgcctcctcgaagaagaggttaatcgtt |
124 |
Q |
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| T |
14743765 |
gaagtatctggcctgactatcgaggagaaggctcgcctgatcaaatcaaccttctccgaagcagagataaaacgcctcctggaagaagaggttaatcgtt |
14743666 |
T |
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| Q |
125 |
tcttcgctcccttcaaatccctcttacatctcttttttcctgctctcgctgaatgcgnnnnnnnngttggcaacatcgatgacaccgttgaattttactt |
224 |
Q |
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| T |
14743665 |
tcttcgctcccttcaaatccctcttacatctcttttttcctgctctcgctgaatgcg-aaaaaaagttggcaacatcgatgacaccgttgaattttactt |
14743567 |
T |
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| Q |
225 |
caatctcatcttcttctctgttggtggttcgtacttccctatctctcacttttccatccaaatatattattattcttcatctca |
308 |
Q |
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| T |
14743566 |
caatctcatcttcttctctgttggtggttcgtacttccctatctctcacttttccatccaaatatattattattcttcatctca |
14743483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 14746687 - 14746601
Alignment:
| Q |
28 |
gtatccggcctgactatcgaggagaaggctcgcctgatcaaatcaaccttctccgaagcagagataaaacgcctcctcgaagaagag |
114 |
Q |
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| T |
14746687 |
gtatccggcctgaccatcgaggagaaggcttgcctgatcaaatcaaccttctctgaagcagagattactcgcctcatcgaagaagag |
14746601 |
T |
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