View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8251_low_50 (Length: 280)

Name: NF8251_low_50
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8251_low_50
NF8251_low_50
[»] chr7 (5 HSPs)
chr7 (1-216)||(28287646-28287857)
chr7 (106-162)||(43542440-43542496)
chr7 (106-162)||(33117877-33117933)
chr7 (106-162)||(27986229-27986284)
chr7 (101-153)||(32595209-32595261)
[»] chr2 (3 HSPs)
chr2 (100-155)||(18497212-18497267)
chr2 (109-162)||(28694387-28694440)
chr2 (106-155)||(38766288-38766337)
[»] chr8 (6 HSPs)
chr8 (106-156)||(373750-373800)
chr8 (109-162)||(5374616-5374669)
chr8 (102-162)||(37288371-37288431)
chr8 (109-162)||(40439758-40439811)
chr8 (109-161)||(23052267-23052319)
chr8 (101-155)||(34944143-34944197)
[»] chr1 (5 HSPs)
chr1 (109-162)||(12967283-12967336)
chr1 (101-154)||(33816370-33816423)
chr1 (101-154)||(33875840-33875893)
chr1 (101-156)||(2603108-2603163)
chr1 (101-153)||(21938051-21938103)
[»] chr3 (7 HSPs)
chr3 (101-161)||(118775-118835)
chr3 (109-159)||(52551092-52551142)
chr3 (106-155)||(1214775-1214825)
chr3 (101-162)||(11225837-11225898)
chr3 (101-162)||(11236093-11236154)
chr3 (115-156)||(25630149-25630190)
chr3 (110-162)||(46879408-46879460)
[»] chr4 (4 HSPs)
chr4 (101-156)||(31063634-31063689)
chr4 (109-161)||(27918229-27918281)
chr4 (107-162)||(19529675-19529730)
chr4 (109-161)||(42170691-42170743)
[»] chr5 (1 HSPs)
chr5 (109-162)||(15711034-15711087)
[»] chr6 (1 HSPs)
chr6 (117-162)||(32109584-32109629)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 28287857 - 28287646
Alignment:
Q  1 aattttcagtgtgatataaagatatatatattaaagtggaccttataggtaatagatttactctatgtgacactccttccatccaaaattatatgtttta 100  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  || ||||||    
T  28287857 aattttctgtgtgatataaagatatatatagtaaagtggaccttataggtaatagatttactgtacgtgacactccttccatccaaaat--tacgtttta 28287760  T
Q  101 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattgnnnnnnnnntaaagtaataactagtaaattgcatgatg 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||         |||||||||||||||||||||||||||||    
T  28287759 atgagttattttacaaaaatatcttttattaatggcatggaaaatataaattaaaataattg--aaaaaaataaagtaataactagtaaattgcatgatg 28287662  T
Q  201 gaaaaataatcattaa 216  Q
    ||||||||||||||||    
T  28287661 gaaaaataatcattaa 28287646  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 43542496 - 43542440
Alignment:
Q  106 ttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||||    
T  43542496 ttattttacaaaaatatcatttattaatagcatggaaaacgtaaattaaaagaattg 43542440  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 33117877 - 33117933
Alignment:
Q  106 ttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    |||||||||||||||||||||||||||||  ||||||||||| || ||||| |||||    
T  33117877 ttattttacaaaaatatcttttattaatgaaatggaaaacatgaactaaaagaattg 33117933  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 27986284 - 27986229
Alignment:
Q  106 ttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    |||||||| ||||| ||||||||||||||| ||| |||||||||||||||| |||||    
T  27986284 ttattttaaaaaaa-atcttttattaatggaatgaaaaacataaattaaaagaattg 27986229  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 32595209 - 32595261
Alignment:
Q  101 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaatta 153  Q
    |||| |||||||| ||||||||| ||||||||||| ||  |||||||||||||    
T  32595209 atgagttattttataaaaatatcctttattaatggtataaaaaacataaatta 32595261  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 18497267 - 18497212
Alignment:
Q  100 aatgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaa 155  Q
    ||||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  18497267 aatgagttattttacaaaaatatattttattaatggtttggaaaacataaattaaa 18497212  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 28694387 - 28694440
Alignment:
Q  109 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    ||||||||||||||  ||||||||||| ||| ||||||||||||||||||||||    
T  28694387 ttttacaaaaatattctttattaatggtatgaaaaacataaattaaaataattg 28694440  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 38766337 - 38766288
Alignment:
Q  106 ttattttacaaaaatatcttttattaatggcatggaaaacataaattaaa 155  Q
    ||||||||||||| |||| || ||||||||||||| ||| ||||||||||    
T  38766337 ttattttacaaaactatccttcattaatggcatgggaaaaataaattaaa 38766288  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 373750 - 373800
Alignment:
Q  106 ttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaa 156  Q
    |||||||||||||||||||||||||||| | |||||||| |||||||||||    
T  373750 ttattttacaaaaatatcttttattaattgtatggaaaatataaattaaaa 373800  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 5374669 - 5374616
Alignment:
Q  109 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    ||||||||||||||| ||||||||||  |||||||||||||| |||||||||||    
T  5374669 ttttacaaaaatatcatttattaatgatatggaaaacataaaataaaataattg 5374616  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 37288371 - 37288431
Alignment:
Q  102 tgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    |||||| |||||||||||||| |||||||||| | ||| |||| |||||||||||||||||    
T  37288371 tgacttgttttacaaaaatattttttattaattgtatgaaaaatataaattaaaataattg 37288431  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 40439758 - 40439811
Alignment:
Q  109 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    ||||||||||||||| || | |||||| |||||||||||||||||||| |||||    
T  40439758 ttttacaaaaatatccttcactaatggtatggaaaacataaattaaaagaattg 40439811  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 23052319 - 23052267
Alignment:
Q  109 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataatt 161  Q
    ||||||||| ||||| || |||||||| ||||||||||| |||||||||||||    
T  23052319 ttttacaaagatatccttcattaatggtatggaaaacattaattaaaataatt 23052267  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 34944197 - 34944143
Alignment:
Q  101 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaa 155  Q
    |||| ||||||||| |||||||| || |||||||  |||||||||||||||||||    
T  34944197 atgagttattttactaaaatatccttcattaatgatatggaaaacataaattaaa 34944143  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 12967336 - 12967283
Alignment:
Q  109 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||    
T  12967336 ttttacaaaaatatcctttattaatggtatggaaaacataaataaaaagaattg 12967283  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 33816423 - 33816370
Alignment:
Q  101 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaa 154  Q
    |||| ||||| ||| |||||||| || |||||||||||||||||||||||||||    
T  33816423 atgagttattatacgaaaatatcattcattaatggcatggaaaacataaattaa 33816370  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 33875893 - 33875840
Alignment:
Q  101 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaa 154  Q
    |||| ||||| ||| |||||||| || |||||||||||||||||||||||||||    
T  33875893 atgagttattatacgaaaatatcattcattaatggcatggaaaacataaattaa 33875840  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 2603163 - 2603108
Alignment:
Q  101 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaa 156  Q
    |||| |||||||||||||||||| || ||||| |  ||||||||||||||||||||    
T  2603163 atgagttattttacaaaaatatcattcattaacgatatggaaaacataaattaaaa 2603108  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 21938103 - 21938051
Alignment:
Q  101 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaatta 153  Q
    |||| ||||||||||||||||||||| |||| ||| |||  ||||||||||||    
T  21938103 atgaattattttacaaaaatatctttcattagtggtatgataaacataaatta 21938051  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 118835 - 118775
Alignment:
Q  101 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataatt 161  Q
    |||| |||||||||||||||||| || |||||||| |||| ||||||||||||||| ||||    
T  118835 atgagttattttacaaaaatatcattaattaatggtatggtaaacataaattaaaagaatt 118775  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 52551092 - 52551142
Alignment:
Q  109 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataa 159  Q
    |||| |||||||||| ||||||||||| ||| |||||||||||||||||||    
T  52551092 ttttgcaaaaatatcatttattaatggtatgaaaaacataaattaaaataa 52551142  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 1214775 - 1214825
Alignment:
Q  106 ttattttacaaaaa-tatcttttattaatggcatggaaaacataaattaaa 155  Q
    |||||||||||||| |||| ||||||| ||| |||||||||||||||||||    
T  1214775 ttattttacaaaaaatatcctttattattggtatggaaaacataaattaaa 1214825  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 11225898 - 11225837
Alignment:
Q  101 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    |||| ||||||||||||||||||||| ||||||   |||||||| ||| ||||||| |||||    
T  11225898 atgaattattttacaaaaatatctttcattaatcatatggaaaaaatacattaaaagaattg 11225837  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 11236154 - 11236093
Alignment:
Q  101 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    |||| ||||||||| |||| |||||||||||||   |||||||| ||||||||||| |||||    
T  11236154 atgagttattttactaaaacatcttttattaattatatggaaaatataaattaaaagaattg 11236093  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 25630190 - 25630149
Alignment:
Q  115 aaaaatatcttttattaatggcatggaaaacataaattaaaa 156  Q
    ||||||||| ||||||||||| || |||||||||||||||||    
T  25630190 aaaaatatcctttattaatggtatcgaaaacataaattaaaa 25630149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 46879408 - 46879460
Alignment:
Q  110 tttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    |||| ||||||||| |||||||||   |||||||||||||||||||| |||||    
T  46879408 tttataaaaatatcatttattaataatatggaaaacataaattaaaagaattg 46879460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 31063689 - 31063634
Alignment:
Q  101 atgacttattttacaaaaatatcttttattaatggcatggaaaacataaattaaaa 156  Q
    |||| |||||||||||||||||| || | |||||| ||||||||||||||||||||    
T  31063689 atgagttattttacaaaaatatccttcactaatggtatggaaaacataaattaaaa 31063634  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 27918229 - 27918281
Alignment:
Q  109 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataatt 161  Q
    ||||||| ||||||| ||||||||| | |||||||||||||||||||| ||||    
T  27918229 ttttacataaatatcatttattaatagtatggaaaacataaattaaaagaatt 27918281  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 19529675 - 19529730
Alignment:
Q  107 tattttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    ||||||||||||||||  ||||||||||| ||||||||| ||||| |||| |||||    
T  19529675 tattttacaaaaatattctttattaatggtatggaaaacctaaataaaaagaattg 19529730  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 42170743 - 42170691
Alignment:
Q  109 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataatt 161  Q
    ||||||||||||||| ||  |||||||  ||||||||||||||||||| ||||    
T  42170743 ttttacaaaaatatcattcgttaatggtgtggaaaacataaattaaaagaatt 42170691  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 15711034 - 15711087
Alignment:
Q  109 ttttacaaaaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    ||||| ||||||||| || |||||||| |||||||||||||||||||| |||||    
T  15711034 ttttataaaaatatcattcattaatggtatggaaaacataaattaaaagaattg 15711087  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 32109584 - 32109629
Alignment:
Q  117 aaatatcttttattaatggcatggaaaacataaattaaaataattg 162  Q
    ||||||| || |||||||| |||||||||||||||||||| |||||    
T  32109584 aaatatcattcattaatggtatggaaaacataaattaaaagaattg 32109629  T

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