View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_55 (Length: 265)
Name: NF8251_low_55
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 49673944 - 49673715
Alignment:
| Q |
27 |
ctgacaagttctccttgtgcaccgctggcctatagnnnnnnnnncttcctacgaagcatgatcattacaagtgattctccaatggatcgccctccacggc |
126 |
Q |
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| T |
49673944 |
ctgacaagttctccttgtgcaccgctggcctatagtttttttt--ttcctacgaagcatgatcattacaagtcattctccaatggatcgccctccacggc |
49673847 |
T |
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| Q |
127 |
tccacctcaaccaccgcatctatatcttgctactatggcaacattgtattttgactacatcattacccggtctcaannnnnnnnnagatttattgtcttt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49673846 |
tccacctcaaccaccgcatctatatcttgctactatggcaacattgtattttgactacatcattacccggtctcaatttttttttagatttattgtcttt |
49673747 |
T |
|
| Q |
227 |
gttggtgattttatggttgtgcttctctgctt |
258 |
Q |
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|||||||||| ||||||||||||||||||||| |
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| T |
49673746 |
gttggtgattatatggttgtgcttctctgctt |
49673715 |
T |
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