View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_57 (Length: 263)
Name: NF8251_low_57
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 24831260 - 24831506
Alignment:
| Q |
1 |
tatgatatgaacataaagttccatagaagcaagcaagcaattgtaccaccaatgccaagataggttgcaaattattcctttctgtttcactcaatctgtt |
100 |
Q |
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| T |
24831260 |
tatgatatgaacataaagttccatagaagcaagcaagcaattgtaccaccaatgccaagataggttgcaaattattcctttctgtttcactcaatctgtt |
24831359 |
T |
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| Q |
101 |
aaaatgttgaagattaccaccattagttactccgatcctctcatttggaagtggtagttgatcaggccttcatttaagggctggaataaaagctaggctt |
200 |
Q |
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| T |
24831360 |
aaaatgttgaagattaccaccgttagttactccgatcctctcatttggaagtggtagttgatcaggccttcatttaagggctggaataaaagctaggctt |
24831459 |
T |
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| Q |
201 |
ctcaataacagtagaagctcactccaaatcattgacaatttaatgtt |
247 |
Q |
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| T |
24831460 |
ctcaataatagtagaagctcactccaaatcattgacaatttattgtt |
24831506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 16947548 - 16947627
Alignment:
| Q |
139 |
tctcatttggaagtggtagttgatcaggccttcattt-aagggctggaataaaagctaggcttctcaataacagtagaag |
217 |
Q |
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| T |
16947548 |
tctcattttgaagtagtagttgatttgactttcattttaagggctggaatcaaagctaggcttctcaataatagtagaag |
16947627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 16947444 - 16947478
Alignment:
| Q |
2 |
atgatatgaacataaagttccatagaagcaagcaa |
36 |
Q |
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| T |
16947444 |
atgatatgaacataaagttctatagaagcaagcaa |
16947478 |
T |
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