View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_58 (Length: 258)
Name: NF8251_low_58
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_58 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 45181702 - 45181474
Alignment:
| Q |
30 |
taccgtgcacctgaactatgtggttcttttttcacaaaagtaagttttttgtttgacatcatattttcttgggttgtgtatgtgtacgtgtacgtgtgat |
129 |
Q |
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| T |
45181702 |
taccgtgcacctgaactatgtggttcttttttcacaaaagtaagttttttgtttgacatcatattttcttgggttgtgtatgt----------gtgtgat |
45181613 |
T |
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| Q |
130 |
acaagatcaaggtgactacacttgatgtattgaa-----------atatgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatat |
218 |
Q |
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| T |
45181612 |
acaagatcaaggtgactacacttgatgtattgaaatatatattatatatgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatat |
45181513 |
T |
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| Q |
219 |
ttggaacattggatgcatattttgcagaagtgcttactgg |
258 |
Q |
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| T |
45181512 |
ttggagcattggatgcata-tttgcagaagtgcttactgg |
45181474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 45174690 - 45174582
Alignment:
| Q |
149 |
acttgatgtattgaaatatgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatatttggaacattggatgcatattttgcagaag |
248 |
Q |
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| T |
45174690 |
acttgatgtattgaaatatgtatgtaatttatattccctttcttatgcagtatacacctggaattgatatttggagcattggatgcata-tttgcagaaa |
45174592 |
T |
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| Q |
249 |
tgcttactgg |
258 |
Q |
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| T |
45174591 |
tgcttactgg |
45174582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 45174805 - 45174745
Alignment:
| Q |
17 |
tgcaactaggtggtaccgtgcacctgaactatgtggttcttttttcacaaaagtaagtttt |
77 |
Q |
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| T |
45174805 |
tgcaactaggtggtaccgtgcacctgaactatgtggttcttttttctcaaaagtaagtttt |
45174745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 29961651 - 29961554
Alignment:
| Q |
156 |
gtattgaaatatgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatatttggaacattggatgcatattttgcagaagtgctta |
254 |
Q |
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| T |
29961651 |
gtattgaaatatgtatgtaatttcaaattcttgtcttttgcagtatactccagcgattgatatttggagcattggatgcata-tttgcagaaatgctta |
29961554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 29962014 - 29961966
Alignment:
| Q |
25 |
ggtggtaccgtgcacctgaactatgtggttcttttttcacaaaagtaag |
73 |
Q |
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| T |
29962014 |
ggtggtatcgtgcacctgaactatgtggttcttttttctcaaaagtaag |
29961966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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