View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8251_low_6 (Length: 730)
Name: NF8251_low_6
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_6 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 578; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 118 - 730
Target Start/End: Original strand, 4862911 - 4863524
Alignment:
| Q |
118 |
caccaaccatgtcaagctcaatgcaaaacgacaccgttcaagcctcatcttcatcgtcccggcccggcggctccgatcaacaaccaacaacggcagtagc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4862911 |
caccaaccatgtcaagctcaatgcaaaacgacaccgttcaagcctcatcttcatcgtcccggcccggcggctccgatcaacaaccaacagcggcagtagc |
4863010 |
T |
|
| Q |
218 |
tcctttgagccgttatgagtcacaaaagaaacgtgactggaacacgtttggacaatacttaaggaaccaatcaccaccagtttctttgtctcagtgcaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4863011 |
tcctttgagccgttatgagtcacaaaagaaacgtgactggaacacgtttggacaatacttaaggaaccaatcaccaccagtttctttgtctcagtgcaac |
4863110 |
T |
|
| Q |
318 |
ttcaaccatgtgcttgagttccttcgttacttagatcaatttggaaagactaaggttcacttgcacggttgcatctttttcggacaacccgatccgccgg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4863111 |
ttcaaccatgtgcttgagttccttcgttacttagatcaatttggaaagactaaggttcacttgcacggttgcatctttttcggacaacccgatccgccgg |
4863210 |
T |
|
| Q |
418 |
caccgtgtacttgtccgttgagacaagcttgggggagtcttgatgcactcatcggacggctaagagctgcttatgaagaacacggtggatcgccggagaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4863211 |
caccgtgtacttgtccgttgagacaagcttgggggagtcttgatgcactcatcggacggctaagagctgcttatgaagaacacggtggatcgccggagaa |
4863310 |
T |
|
| Q |
518 |
taatccgtttggaaccggagctattcgtgtttaccttcgtgaagttaaggagtgtcaatcaaaggctagagggatcccttacacaaagaaaaagaagaag |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4863311 |
taatccgtttggaaccggagctattcgtgtttaccttcgtgaagttaaggagtgtcaatcaaaggctagagggatcccttacacaaagaaaaagaagaag |
4863410 |
T |
|
| Q |
618 |
aggagtcaacttaagggcactcataatactacttctaagtctttcaaccaattagcttcttgagattcatggt-aannnnnnnnatcaaattaattaata |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
4863411 |
aggagtcaacttaagggcactcataatactacttctaagtctttcaaccaattagcttcttgagattcatggtaaattttttttatcaaattaattaata |
4863510 |
T |
|
| Q |
717 |
tttgtatgccttaa |
730 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4863511 |
tttgtatgccttaa |
4863524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 4862811 - 4862876
Alignment:
| Q |
18 |
ctccattatacctctccttccctcaacatctattaatctcaattcccaccttcacttacacaatag |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4862811 |
ctccattatacctctccttccctcaacatctattaatctcaattcccaccttcacttacacaatag |
4862876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 225 - 615
Target Start/End: Original strand, 39556363 - 39556753
Alignment:
| Q |
225 |
agccgttatgagtcacaaaagaaacgtgactggaacacgtttggacaatacttaaggaaccaatcaccaccagtttctttgtctcagtgcaacttcaacc |
324 |
Q |
| |
|
||||| ||||| || ||||||| | | || |||||||| ||||| |||||||||| |||| | |||||| ||| | | ||||| ||||| | ||||| |
|
|
| T |
39556363 |
agccgctatgaatctcaaaagagaagagattggaacacttttggtcaatacttaaacaacctaagaccacccgttccactttctcactgcaattccaacc |
39556462 |
T |
|
| Q |
325 |
atgtgcttgagttccttcgttacttagatcaatttggaaagactaaggttcacttgcacggttgcatctttttcggacaacccgatccgccggcaccgtg |
424 |
Q |
| |
|
||||| | || || ||| | || ||||||||||||||||| || || ||||| || || ||||| || |||| ||||| || || || || ||||| || |
|
|
| T |
39556463 |
atgtgttggaatttcttaggtatttagatcaatttggaaaaaccaaagttcatttacaaggttgtatgttttatggacagccagagccaccagcaccttg |
39556562 |
T |
|
| Q |
425 |
tacttgtccgttgagacaagcttgggggagtcttgatgcactcatcggacggctaagagctgcttatgaagaacacggtggatcgccggagaataatccg |
524 |
Q |
| |
|
||| ||||| | |||||||||||||| ||||||||||| || || || || |||| ||||||||||| ||| |||| ||| | || |||| |||||| |
|
|
| T |
39556563 |
tacatgtccacttagacaagcttggggaagtcttgatgctctaattgggaggttaagggctgcttatgaggaaaacggcggaactccagagactaatcct |
39556662 |
T |
|
| Q |
525 |
tttggaaccggagctattcgtgtttaccttcgtgaagttaaggagtgtcaatcaaaggctagagggatcccttacacaaagaaaaagaaga |
615 |
Q |
| |
|
|| | | ||| |||||||| ||||| ||| | || |||| |||||||||| | |||||||| || |||||||||| ||||||||||||| |
|
|
| T |
39556663 |
ttcgcgagcggtgctattcgcgtttatcttagagaggttagggagtgtcaagctaaggctaggggtatcccttacaagaagaaaaagaaga |
39556753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 234 - 507
Target Start/End: Complemental strand, 32002385 - 32002112
Alignment:
| Q |
234 |
gagtcacaaaagaaacgtgactggaacacgtttggacaatacttaaggaaccaatcaccaccagtttctttgtctcagtgcaacttcaaccatgtgcttg |
333 |
Q |
| |
|
||||||||||||| | | || |||||||| |||||||||||||||||||| ||| ||||||||| | | || | || || | |||||||| |||| |
|
|
| T |
32002385 |
gagtcacaaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccaccagtggcactatcaaattgtaattcaaaccatgttcttg |
32002286 |
T |
|
| Q |
334 |
agttccttcgttacttagatcaatttggaaagactaaggttcacttgcacggttgcatctttttcggacaacccgatccgccggcaccgtgtacttgtcc |
433 |
Q |
| |
|
| ||||| | ||||| |||||||||||||| || || || ||||| || ||||| | |||||||||||| |||| || || | ||| ||||||||||| |
|
|
| T |
32002285 |
aattcctaaggtacttggatcaatttggaaaaacaaaagtgcacttacaaggttgtttgtttttcggacaaaccgaaccacctggaccatgtacttgtcc |
32002186 |
T |
|
| Q |
434 |
gttgagacaagcttgggggagtcttgatgcactcatcggacggctaagagctgcttatgaagaacacggtggat |
507 |
Q |
| |
|
| | |||||||||||| |||||||||||||| || ||| | |||||||||||||||||||| | ||||||| |
|
|
| T |
32002185 |
tctaaaacaagcttggggaagtcttgatgcactaattggaagattaagagctgcttatgaagaaaatggtggat |
32002112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 315 - 595
Target Start/End: Original strand, 35814564 - 35814844
Alignment:
| Q |
315 |
aacttcaaccatgtgcttgagttccttcgttacttagatcaatttggaaagactaaggttcacttgcacggttgcatctttttcggacaacccgatccgc |
414 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||| | ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| || | |
|
|
| T |
35814564 |
aacttcaaccatgttcttgattttcttcgttaccttgatcaatttggtaagactaaggttcactttcaaggttgcatcttctttggacaacctaccccac |
35814663 |
T |
|
| Q |
415 |
cggcaccgtgtacttgtccgttgagacaagcttgggggagtcttgatgcactcatcggacggctaagagctgcttatgaagaacacggtggatcgccgga |
514 |
Q |
| |
|
| ||||| ||| ||||||| | | ||||||||||| ||||||||||||||||||||||| || ||||||| || ||||| |||||||||| |||| |
|
|
| T |
35814664 |
ctgcaccttgtgcttgtcctctcaagcaagcttggggaagtcttgatgcactcatcggacgccttcgagctgcctacgaagagaacggtggatcatcgga |
35814763 |
T |
|
| Q |
515 |
gaataatccgtttggaaccggagctattcgtgtttaccttcgtgaagttaaggagtgtcaatcaaaggctagagggatccc |
595 |
Q |
| |
|
|| ||| || |||| ||||||||||| |||||||||||||| || ||||| |||| |||||| ||||||||||| |
|
|
| T |
35814764 |
gactaacccctttgccggaggagctattcgggtttaccttcgtgaggtgaaggatagtcagcaaaaggcaagagggatccc |
35814844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 336 - 497
Target Start/End: Original strand, 30941963 - 30942124
Alignment:
| Q |
336 |
ttccttcgttacttagatcaatttggaaagactaaggttcacttgcacggttgcatctttttcggacaacccgatccgccggcaccgtgtacttgtccgt |
435 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| | || ||||| || |||| |||||||| || || || ||||| ||||||||||| |
|
|
| T |
30941963 |
ttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcaccttgtacttgtcctc |
30942062 |
T |
|
| Q |
436 |
tgagacaagcttgggggagtcttgatgcactcatcggacggctaagagctgcttatgaagaa |
497 |
Q |
| |
|
| |||||||||||||| || | ||||| || || ||| | |||| ||||||||||||||| |
|
|
| T |
30942063 |
ttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaa |
30942124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 439 - 497
Target Start/End: Complemental strand, 33672113 - 33672055
Alignment:
| Q |
439 |
gacaagcttgggggagtcttgatgcactcatcggacggctaagagctgcttatgaagaa |
497 |
Q |
| |
|
||||||||||||| |||||||||||| | || ||| | ||||||||||||| ||||||| |
|
|
| T |
33672113 |
gacaagcttggggaagtcttgatgcattgattggaagactaagagctgcttttgaagaa |
33672055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University