View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_62 (Length: 249)
Name: NF8251_low_62
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 29941391 - 29941563
Alignment:
| Q |
1 |
aaatttgtgtaaatatttcaacttattaagattgattataacttctgtagcgtttgtaaaatgattattaagtgatcactttgataatgtaaaatttccc |
100 |
Q |
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| T |
29941391 |
aaatttgtgtaaatatatcaacttattaagattgattataacttctgtagcgtttgtaaaatgattattaagtgatcactttgataatgtaaaatttccc |
29941490 |
T |
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| Q |
101 |
ttctccaatttttaaaataaaactttgggggcatttgaggaaagagcataattaagtgtctcaataaaaacta |
173 |
Q |
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| T |
29941491 |
ttctccaatttttaaaataaaactttgggggcatttgaggaaagagcataattaagtgtctcaataaaaacta |
29941563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 29941560 - 29941604
Alignment:
| Q |
193 |
actagaggcccttggagttggcttagttgaaagtcccctggattc |
237 |
Q |
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| T |
29941560 |
actagaggcccttggagttggcttagttgaaagtccccgggattc |
29941604 |
T |
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