View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_65 (Length: 243)
Name: NF8251_low_65
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 698932 - 699160
Alignment:
| Q |
1 |
agaagatctgtttgtttatgataaatcatacacttttctccacatcattgtagcatgtgatcaattgtcgttcttcattgtttgtgagatggtgaagcat |
100 |
Q |
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| T |
698932 |
agaagatctgtttgtttatgataaatcatacacttttctccacatcattgtagcatgtgatcaattgtcgttcttcattgtttgtgagatggtgaagcat |
699031 |
T |
|
| Q |
101 |
gtgaattttctccacattttttatgtttatacaataactaaatatatgttttgttttaaaagattataatcaagaatccattaaaagagagaaccaattg |
200 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
699032 |
gtgaattttctccacatctttgatgtttatacaataactaaatatatgttttgttttaaaagattataatcaagaatccattaaaagagagaaccaattg |
699131 |
T |
|
| Q |
201 |
taaatagacataacgtgcaatttcgtgtg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
699132 |
taaatagacataacgtgcaatttcgtgtg |
699160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 767230 - 767458
Alignment:
| Q |
1 |
agaagatctgtttgtttatgataaatcatacacttttctccacatcattgtagcatgtgatcaattgtcgttcttcattgtttgtgagatggtgaagcat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
767230 |
agaagatctgtttgtttatgataaatcatacacttttctccacatcattgtagcatgtgatcaattgtcgttcttcattgtttgtgagatggtgaagcat |
767329 |
T |
|
| Q |
101 |
gtgaattttctccacattttttatgtttatacaataactaaatatatgttttgttttaaaagattataatcaagaatccattaaaagagagaaccaattg |
200 |
Q |
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| T |
767330 |
gtgaattttctccacatctttgatgtttatacaataactaaatatatgttttgttttaaaagattataatcaagaatccattaaaagagagaaccaattg |
767429 |
T |
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| Q |
201 |
taaatagacataacgtgcaatttcgtgtg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
767430 |
taaatagacataacgtgcaatttcgtgtg |
767458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 36963003 - 36962775
Alignment:
| Q |
1 |
agaagatctgtttgtttatgataaatcatacacttttctccacatcattgtagcatgtgatcaattgtcgttcttcattgtttgtgagatggtgaagcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36963003 |
agaagatctgtttgtttatgataaatcatacacttttctccacatcattgtagcatgtgatcaattgtcgttcttcattgtttgtgagatggtgaagcat |
36962904 |
T |
|
| Q |
101 |
gtgaattttctccacattttttatgtttatacaataactaaatatatgttttgttttaaaagattataatcaagaatccattaaaagagagaaccaattg |
200 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36962903 |
gtgaattttctccacatctttgatgtttatacaataactaaatatatgttttgttttaaaagattataatcaagaatccattaaaagagagaaccaattg |
36962804 |
T |
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| Q |
201 |
taaatagacataacgtgcaatttcgtgtg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
36962803 |
taaatagacataacgtgcaatttcgtgtg |
36962775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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