View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_66 (Length: 241)
Name: NF8251_low_66
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_66 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 32700529 - 32700756
Alignment:
| Q |
14 |
catcaggttcagcagtgtgggcatctagagcacggctcctaagttttactcatttgaatttggtttcatgtaattcctaaggacatctctataaaaatca |
113 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32700529 |
catcaggttcagaagtgtgggcatctagagcactgctcctaagttttactcatttgaatttggtttcatgtaattcctaaggacatctctataaaaatca |
32700628 |
T |
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| Q |
114 |
gcaatgttccattgttttggagctttttccaacccattctcatcaacttccttttggccagtaaccttcttataaaatggtgccaatttgtacgaagccc |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
32700629 |
gcaatgttccattgtgttggagctttttccaacccattctcatcaacttccttttggcgagtaaccttcttataaaatcgtgccaatttgtatgaagccc |
32700728 |
T |
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| Q |
214 |
gctataatcgaacactttgagcaccacc |
241 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
32700729 |
gctttaatcgaacactttgagcaccacc |
32700756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 3956537 - 3956756
Alignment:
| Q |
13 |
tcatcaggttcagcagtgtgggcatctagagcacggctcctaagttttactcatttgaatttggtttcatgtaattcctaaggacatctctataaaaatc |
112 |
Q |
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||||||||||||| | |||| ||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3956537 |
tcatcaggttcagaaatgtgagcatctagagct--gctactagtctttactcgtttgaatttggtttcatgtaattcctaaggacatctcggtaaaaatc |
3956634 |
T |
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| Q |
113 |
agcaatgttccattgttttggagctttttccaacccattctcatcaacttccttttggccagtaaccttcttataaaatggtgccaatttgtacgaagcc |
212 |
Q |
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||| ||||||||| || |||| || |||||||||||| |||||||||||| ||||| ||||||| ||||||||||||| ||| ||||||| || ||| |
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| T |
3956635 |
agcgatgttccatcgtaatggacctgtttccaacccatcctcatcaacttcattttgcccagtaatcttcttataaaatcgtgaacatttgtaggatgcc |
3956734 |
T |
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| Q |
213 |
cgctataatcgaacactttgag |
234 |
Q |
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|||| |||||||||||| |||| |
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| T |
3956735 |
cgctttaatcgaacactctgag |
3956756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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