View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8251_low_68 (Length: 238)
Name: NF8251_low_68
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_68 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45181486 - 45181264
Alignment:
| Q |
1 |
aagtgcttactgggaggccattgtttcctgggacaaatacgaagaaccaattggatatcatgactgatttacttggaactcctcctcctgagtccatggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45181486 |
aagtgcttactgggaggccattgtttcctcggacaaataggaagaaccaattggatatcatgactgatttgcttggaactcctcctcctgagtccatggt |
45181387 |
T |
|
| Q |
101 |
caatgtaagtttatcaaaatctattccgcagttttatgaaatcaataggcatgcttaatgctatagttagaataatgctgaatttctattgcttctnnnn |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45181386 |
caacgtaagtttatcaaaatctattccgcagttttatgaaatcaataggcatgcttaatgctatagttagaataatgctgaatttctgttgcttctaaaa |
45181287 |
T |
|
| Q |
201 |
nnntatttcaatattatgttttc |
223 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
45181286 |
aaatatttcaatattatgttttc |
45181264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 45174591 - 45174439
Alignment:
| Q |
4 |
tgcttactgggaggccattgtttcctgggacaaatacgaagaaccaattggatatcatgactgatttacttggaactcctcctcctgagtccatggtcaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | | | ||||||||||||||||||||||| ||||| |||||||||||||||||||| | | |
|
|
| T |
45174591 |
tgcttactgggaggccattgtttcctgggaaaaatgtggtgcatcaattggatatcatgactgatttgcttggcactcctcctcctgagtccattgcaag |
45174492 |
T |
|
| Q |
104 |
tgtaagtttatcaaaatctattccgcagttttatgaaatcaataggcatgctt |
156 |
Q |
| |
|
|| ||||||| ||||||| |||||| |||| ||||||||| || ||||||| |
|
|
| T |
45174491 |
ggttagtttattaaaatctgctccgcaattttctgaaatcaacagtcatgctt |
45174439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University