View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8251_low_70 (Length: 236)

Name: NF8251_low_70
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8251_low_70
NF8251_low_70
[»] scaffold0103 (1 HSPs)
scaffold0103 (19-219)||(6297-6497)
[»] chr7 (4 HSPs)
chr7 (19-219)||(12808872-12809072)
chr7 (19-79)||(37433075-37433135)
chr7 (132-207)||(275977-276052)
chr7 (177-213)||(37433039-37433075)
[»] chr6 (5 HSPs)
chr6 (19-219)||(2633512-2633712)
chr6 (19-219)||(22981113-22981309)
chr6 (19-219)||(23807099-23807295)
chr6 (25-79)||(12082787-12082841)
chr6 (132-207)||(872157-872232)
[»] chr8 (2 HSPs)
chr8 (19-79)||(27260988-27261048)
chr8 (19-79)||(32447174-32447234)
[»] chr5 (1 HSPs)
chr5 (19-79)||(21838399-21838459)
[»] chr2 (1 HSPs)
chr2 (132-204)||(25126951-25127023)


Alignment Details
Target: scaffold0103 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 6297 - 6497
Alignment:
Q  19 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattgatttgattcctgcttaaaaatttgcatttcaagatgatag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6297 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattgatttgattcctgcttaaaaatttgcatttcaagatgatag 6396  T
Q  119 ttttatattttaaattctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagacttctgatacaaaatttggaatggaatgat 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6397 ttttttattttaaattctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagacttctgatacaaaatttggaatggaatgat 6496  T
Q  219 g 219  Q
    |    
T  6497 g 6497  T

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Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 12808872 - 12809072
Alignment:
Q  19 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattgatttgattcctgcttaaaaatttgcatttcaagatgatag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12808872 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattgatttgattcctgcttaaaaatttgcatttcaagatgatag 12808971  T
Q  119 ttttatattttaaattctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagacttctgatacaaaatttggaatggaatgat 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12808972 ttttttattttaaattctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagacttctgatacaaaatttggaatggaatgat 12809071  T
Q  219 g 219  Q
    |    
T  12809072 g 12809072  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 37433135 - 37433075
Alignment:
Q  19 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattga 79  Q
    ||||| ||||||||||||| ||||||||||||| | |||||||||||||||||| ||||||    
T  37433135 acaataacctttggttctgccatcattgcatcatttcataaaataagtttgcatgcattga 37433075  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 276052 - 275977
Alignment:
Q  132 attctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagacttctgatacaaaatttgg 207  Q
    |||||| |||||||||||||| ||||||||||| ||||||| ||||| ||||||||  |  |||||||||||||||    
T  276052 attctgcatgataaggattctgaatgttgtgtctaaggtgttaaaaattgatatagtttgttgatacaaaatttgg 275977  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 37433075 - 37433039
Alignment:
Q  177 aactgatatagacttctgatacaaaatttggaatgga 213  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  37433075 aactgatataaacttctgatgcaaaatttggaatgga 37433039  T

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Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 2633712 - 2633512
Alignment:
Q  19 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattgatttgattcctgcttaaaaatttgcatttcaagatgatag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2633712 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattgatttgattcctgcttaaaaatttgcatttcaagatgatag 2633613  T
Q  119 ttttatattttaaattctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagacttctgatacaaaatttggaatggaatgat 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2633612 ttttttattttaaattctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagacttctgatacaaaatttggaatggaatgat 2633513  T
Q  219 g 219  Q
    |    
T  2633512 g 2633512  T

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Target: chr6; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 22981309 - 22981113
Alignment:
Q  19 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattgatttgattcctgcttaaaaatttgcatttcaagatgatag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22981309 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattgatttgattcctgcttaaaaatttgcatttcaagatgatag 22981210  T
Q  119 ttttatattttaaattctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagacttctgatacaaaatttggaatggaatgat 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  22981209 ttttttattttaaattctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagactt----tacaaaatttggaatggaatgat 22981114  T

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Target: chr6; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 23807099 - 23807295
Alignment:
Q  19 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattgatttgattcctgcttaaaaatttgcatttcaagatgatag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23807099 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattgatttgattcctgcttaaaaatttgcatttcaagatgatag 23807198  T
Q  119 ttttatattttaaattctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagacttctgatacaaaatttggaatggaatgat 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  23807199 ttttttattttaaattctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagactt----tacaaaatttggaatggaatgat 23807294  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 12082841 - 12082787
Alignment:
Q  25 acctttggttctgacatcattgcatcaatccataaaataagtttgcatacattga 79  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||||||||||||    
T  12082841 acctttggttctcccatcattgcatcattccataaaataagtttgcatacattga 12082787  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 872157 - 872232
Alignment:
Q  132 attctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagacttctgatacaaaatttgg 207  Q
    |||||| |||||||||||||| ||||||||||| ||||||| ||||| ||||||||  |  |||||||||||||||    
T  872157 attctgcatgataaggattctgaatgttgtgtctaaggtgttaaaaattgatatagtttgttgatacaaaatttgg 872232  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 27261048 - 27260988
Alignment:
Q  19 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattga 79  Q
    ||||| ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||    
T  27261048 acaataacctttggttctgccatcattgcatcattctataaaataagtttgcatacattga 27260988  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 32447234 - 32447174
Alignment:
Q  19 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattga 79  Q
    ||||| ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||    
T  32447234 acaataacctttggttctgccatcattgcatcattctataaaataagtttgcatacattga 32447174  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 21838399 - 21838459
Alignment:
Q  19 acaatgacctttggttctgacatcattgcatcaatccataaaataagtttgcatacattga 79  Q
    ||||| ||||||||||||| |||||||||||   |||||||||||||||||||||||||||    
T  21838399 acaataacctttggttctgccatcattgcattgttccataaaataagtttgcatacattga 21838459  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 25127023 - 25126951
Alignment:
Q  132 attctgtatgataaggattctaaatgttgtgtcgaaggtgtgaaaaactgatatagacttctgatacaaaatt 204  Q
    |||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||  |  ||||||||||||    
T  25127023 attctgcatgataaggattctgaatgttgtgtctaaggtgttaaaaactgatatagtttgttgatacaaaatt 25126951  T

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