View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8251_low_71 (Length: 228)
Name: NF8251_low_71
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_71 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 38048044 - 38047852
Alignment:
| Q |
20 |
atatgaacatgcaatcaactagcacaaacctcaacttgttcctcttgtttttgacacttctcattacactcatctctctatttggacgatacatggctcc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38048044 |
atatgaacatgcaatcaactagcacaaacctcaacttgttcctcttgtttttgacacttctcattacactcatctctctatttggacgatacatggctcc |
38047945 |
T |
|
| Q |
120 |
agcatcaaattcaaatgttatagaaggtggagatgatggggttcaatccacttggggatcagttgctttgcttgtgtttcttttggttttcat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38047944 |
agcatcaaattcaaatgttatagaaggtggagatgatggggttcaatccacttggggatcagttgctttgcttgtgtttcttttggttttcat |
38047852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University