View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8251_low_76 (Length: 205)
Name: NF8251_low_76
Description: NF8251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8251_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 47843382 - 47843234
Alignment:
| Q |
11 |
acatcatcatttatcacgtccagcaaaaaataatatttaagtctatggaccaaccgctaccatttttgacttgtttgcttataaagtcaaagaaagaggt |
110 |
Q |
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| T |
47843382 |
acatcatcgtttatcacgtccagcaaaaaataatattgaagtctatggaccaaccgctaccatttttgacttgtttgcttataaagtca----aagaggt |
47843287 |
T |
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| Q |
111 |
cacaatcatataaaagctcacatatactcctatcctggctctcactgagtgtg |
163 |
Q |
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| T |
47843286 |
cacaatcatataaaagctcacgtatactcctatcctggctctcactgagtgtg |
47843234 |
T |
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