View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8252_high_1 (Length: 451)

Name: NF8252_high_1
Description: NF8252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8252_high_1
NF8252_high_1
[»] chr5 (9 HSPs)
chr5 (1-436)||(17383368-17383803)
chr5 (1-436)||(17376992-17377438)
chr5 (213-432)||(17392158-17392381)
chr5 (18-144)||(19806841-19806967)
chr5 (1-54)||(17392453-17392506)
chr5 (18-99)||(20111938-20112019)
chr5 (18-98)||(19653900-19653980)
chr5 (18-80)||(13712176-13712238)
chr5 (18-78)||(1347935-1347995)
[»] chr1 (2 HSPs)
chr1 (4-258)||(26052955-26053204)
chr1 (268-427)||(26053532-26053696)
[»] scaffold0009 (2 HSPs)
scaffold0009 (16-80)||(40602-40666)
scaffold0009 (16-72)||(33992-34048)
[»] chr2 (1 HSPs)
chr2 (37-80)||(15784656-15784699)
[»] chr3 (4 HSPs)
chr3 (18-80)||(24912861-24912923)
chr3 (18-99)||(24890924-24891005)
chr3 (19-80)||(32226559-32226620)
chr3 (19-99)||(32242030-32242110)


Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 17383803 - 17383368
Alignment:
Q  1 aaattagtaactataataaacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaatgcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17383803 aaattagtaactataataaacaaacctttagaatggtaagagtttgaagtatgggacaattctgtagcattttcactaccacctcccagttatgaatgcg 17383704  T
Q  101 ttcgaaccaagttagttgaagttcccttaagttttcaagcacgggaaggcttttctcaaatgtattgatttgtttattggaaagacttcgtgctatctgc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||    
T  17383703 tccgaaccaagttagttgaagttcccttaagttttcaagcacgggaaggcttttctcaaatgtattgatttgtttattggaaagattttgttctatctgc 17383604  T
Q  201 acaggcacaagacaaaaaagaaaatacatacattttataaatacagataatcaaacatcacataacttaatattgattataaaagaagatgcatcattat 300  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17383603 acaggcacaacacaaaaaagaaaatacatacatcttataaatacagataatcaaacatcacataacttaatattgattataaaagaagatgcatcattat 17383504  T
Q  301 catatatcatacccatatacttagaaatttgacattataaactgctgtgaacgggacattaaataaagagatacgagcccgagtcaatttggataagtgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17383503 catatatcatacccatatacttagaaatttgacattataaactgctgtgaacgggacattaaataaagagatacgagcccgagtcaatttggataagtgt 17383404  T
Q  401 ttaaagtaccctccatctggaacaccggcatttgct 436  Q
    ||||||||||||||||||||||||||||||||||||    
T  17383403 ttaaagtaccctccatctggaacaccggcatttgct 17383368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 17377438 - 17376992
Alignment:
Q  1 aaattagtaactataataaacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaatgc- 99  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||     
T  17377438 aaattagtaactataataaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcaataccacctcccagtcatgaacgct 17377339  T
Q  100 ----gttcga-accaagttagttgaagttcccttaagttttcaagcacgggaaggcttttctcaaatgtattgatttgtttattggaaagacttcgtgct 194  Q
         || || |||||| ||||||||||    ||| |||||||| || |||||||||||| ||||||| |||||||| ||||| ||||||||||||| ||    
T  17377338 aatgcttggagaccaagatagttgaagtctggttatgttttcaaacatgggaaggcttttgtcaaatgaattgatttctttatcggaaagacttcgttct 17377239  T
Q  195 atctgcacaggcacaagacaaaaaagaaaatacatacattttataaatacagata-atcaaacatcacataacttaatattgattataaaagaagatgca 293  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||| ||||||||| | | ||||| | |  |  ||||||||||||| ||||||||||||    
T  17377238 atctgcacagacacaacacaaaaaagaaaatacatacatcttatacatacagatatacctaacat-ataatatataatattgattat-aaagaagatgca 17377141  T
Q  294 tcattatcata------tatcatacccatatacttagaaatttgacattataaactgctgtgaacgggacattaaataaagagatacgagcccgagtcaa 387  Q
    |||||||||||       |||||||||| | |||||||||||||||||||||||||||  | ||||| ||| ||| ||||||||||||||||||||||||    
T  17377140 tcattatcatagatcatcatcatacccaaacacttagaaatttgacattataaactgcaattaacggaacactaattaaagagatacgagcccgagtcaa 17377041  T
Q  388 tttggataagtgtttaaagtaccctccatctggaacaccggcatttgct 436  Q
     |||||||||||||||||||| |||||  ||||||||||||||||||||    
T  17377040 cttggataagtgtttaaagtagcctcccactggaacaccggcatttgct 17376992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 213 - 432
Target Start/End: Complemental strand, 17392381 - 17392158
Alignment:
Q  213 caaaaaagaaaatacatacattttataaatacagataatcaaacatcacata--acttaatattgattataaaagaagatgcatcattatcatatatcat 310  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||  |  ||||||||||||||||| |||||||||||||||||| ||||||    
T  17392381 caaaaaagaaaatacatacatcttataaatacagata-tcaaacatcacatataatataatattgattataaaataagatgcatcattatcatctatcat 17392283  T
Q  311 acc---catatacttagaaatttgacattataaactgctgtgaacgggacattaaataaagagatacgagcccgagtcaatttggataagtgtttaaagt 407  Q
    |||   |||| | ||||| | |||||||||||||||||| ||||||| ||||| || |||  ||||| ||||    |||| ||||| |||||||||||||    
T  17392282 acctcacatacagttagatacttgacattataaactgctttgaacggcacattgaacaaactgatacaagccaatatcaacttggacaagtgtttaaagt 17392183  T
Q  408 accctccatctggaacaccggcatt 432  Q
    ||||||| |||||||||||||||||    
T  17392182 accctccctctggaacaccggcatt 17392158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 19806967 - 19806841
Alignment:
Q  18 aaacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaatgcgttcgaaccaagttagtt 117  Q
    ||||||||||||  ||| | ||||||||| |||||||||||||| || ||||||||||||||| | ||||| | ||||  ||  | | |||||| |||||    
T  19806967 aaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccaatcatgagcgccattgcaccaagatagtt 19806868  T
Q  118 gaagttcccttaagttttcaagcacgg 144  Q
    |||| ||  |||||||||||| |||||    
T  19806867 gaaggtcagttaagttttcaaacacgg 19806841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17392506 - 17392453
Alignment:
Q  1 aaattagtaactataataaacaaacctttagaatggtaagagtttgaagtttgg 54  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||||||||||    
T  17392506 aaattagtaactataatgaacaaacctttgcaatgttaagagtttgaagtttgg 17392453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 20112019 - 20111938
Alignment:
Q  18 aaacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaatgc 99  Q
    ||||||||||||| |||  |||| | ||||||||||||||| ||||| ||||||||||||||| |  |||||| ||||||||    
T  20112019 aaacaaacctttacaattttaagtgcttgaagtttgggacatttctggagcattttcactacctcaccccagtcatgaatgc 20111938  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 19653900 - 19653980
Alignment:
Q  18 aaacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaatg 98  Q
    ||||||||||||  |||  |||||| |||||||||||||||||  |||||||||||||  ||| | |||||||||||||||    
T  19653900 aaacaaacctttttaattttaagagcttgaagtttgggacaatattgtagcattttcataacctcttcccagttatgaatg 19653980  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 13712176 - 13712238
Alignment:
Q  18 aaacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcactacc 80  Q
    ||||||||||||| |||   |||||||||||||||||||||  | ||||||||||||||||||    
T  13712176 aaacaaacctttacaattcgaagagtttgaagtttgggacagctttgtagcattttcactacc 13712238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 1347935 - 1347995
Alignment:
Q  18 aaacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcacta 78  Q
    ||||||||||||  |||||  |||||||||||||| ||||||||||  |||||||||||||    
T  1347935 aaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcacta 1347995  T

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Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 26052955 - 26053204
Alignment:
Q  4 ttagtaactataataaacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaatgcgttc 103  Q
    |||||||||||| |||||||||||||  ||||  |||||  |||||||||||||||||||||||||||||||| || |||||||||| |||||||| ||     
T  26052955 ttagtaactatattaaacaaacctttgcaatgtaaagagagtgaagtttgggacaattctgtagcattttcaccactacctcccagtcatgaatgccttg 26053054  T
Q  104 gaaccaagttagttgaagttcccttaagttttcaagcacgggaaggcttttctcaaatgtattgatttgtttattggaaagacttcgtgctatctgcaca 203  Q
      |||||  ||||| ||||||  |||||||||||| || |||||||||||| ||||||| |||||||| |||||||||||||||| |  | ||||||| |    
T  26053055 agaccaaaatagttcaagttcggttaagttttcaaacatgggaaggcttttgtcaaatgaattgatttctttattggaaagactttgcccaatctgcata 26053154  T
Q  204 ggcacaagacaaaaaagaaaatacatacattttataaatacagataatcaaacat 258  Q
    | ||||  ||||||||||||||||||     |||||||||||||| |||||||||    
T  26053155 gccacatcacaaaaaagaaaatacatc----ttataaatacagat-atcaaacat 26053204  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 427
Target Start/End: Original strand, 26053532 - 26053696
Alignment:
Q  268 taatattgattataaaagaagatgcatcattatcatatatcata-cccatatacttagaaat----ttgacattataaactgctgtgaacgggacattaa 362  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| |||||||||  | | ||    |||||||||||||||||| ||||||| ||||| |    
T  26053532 taatattgattataaaagaagatgaatcatcatcatatatcataccccatatacagatagatacacttgacattataaactgctttgaacggcacattga 26053631  T
Q  363 ataaagagatacgagcccgagtcaatttggataagtgtttaaagtaccctccatctggaacaccg 427  Q
    | ||   ||||| ||||    |||| || || |||||||||||||||||||| ||||||||||||    
T  26053632 acaattcgatacaagccgatttcaactttgacaagtgtttaaagtaccctccctctggaacaccg 26053696  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 40666 - 40602
Alignment:
Q  16 ataaacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcactacc 80  Q
    ||||||||||||||  ||| | ||||||||||||||| ||||||||||| |||||||||| ||||    
T  40666 ataaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacc 40602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 34048 - 33992
Alignment:
Q  16 ataaacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattt 72  Q
    ||||||||||||||  ||| | ||||||||||||||| ||||||| ||| |||||||    
T  34048 ataaacaaacctttttaatcgaaagagtttgaagtttcggacaatgctggagcattt 33992  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 15784699 - 15784656
Alignment:
Q  37 taagagtttgaagtttgggacaattctgtagcattttcactacc 80  Q
    |||||| ||||||||| |||||||||||||||||||||||||||    
T  15784699 taagagcttgaagttttggacaattctgtagcattttcactacc 15784656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 24912923 - 24912861
Alignment:
Q  18 aaacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcactacc 80  Q
    |||||||||||| ||||  | |||||||||||||||||||||| ||  |||||||||||||||    
T  24912923 aaacaaaccttttgaatttttagagtttgaagtttgggacaatcctaaagcattttcactacc 24912861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 24891005 - 24890924
Alignment:
Q  18 aaacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaatgc 99  Q
    |||||||||||| ||||  | ||| |||||||||||||||||| ||  |||||||||||| || | ||||| | ||||||||    
T  24891005 aaacaaaccttttgaatttttagaatttgaagtttgggacaatcctaaagcattttcactgcctcgtcccaatcatgaatgc 24890924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 32226620 - 32226559
Alignment:
Q  19 aacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcactacc 80  Q
    |||||||||||  ||| | |||||||||||||||||||||||  || ||||||| |||||||    
T  32226620 aacaaacctttgaaattggaagagtttgaagtttgggacaataatggagcatttgcactacc 32226559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 32242030 - 32242110
Alignment:
Q  19 aacaaacctttagaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaatgc 99  Q
    |||||||||||| ||| | |||||||||||| ||||||||||  || ||||||| || |||| | | ||| ||||||||||    
T  32242030 aacaaacctttaaaattgaaagagtttgaaggttgggacaataatggagcatttgcagtacctcataccaattatgaatgc 32242110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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