View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8252_high_6 (Length: 276)
Name: NF8252_high_6
Description: NF8252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8252_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 103 - 257
Target Start/End: Original strand, 24424493 - 24424647
Alignment:
| Q |
103 |
cccctacaggttttgaaaaacataataattgcaaacaacaacatttgcatgatgagaactttatatatggctatataattcatgacagggaagatatgac |
202 |
Q |
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| T |
24424493 |
cccctacaggttttgaaaaacataataattgcaaacaacaacatttgcatgatgagaactttatatatggctatataattcatgacagggaagatatgac |
24424592 |
T |
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| Q |
203 |
gtgagtaaaataatattgtcattgtgaacaatgaagttgaataatgtgatctttg |
257 |
Q |
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| T |
24424593 |
gtgagtaaaataatattgtcattatgaacaatgaagttgaataatgtgatctttg |
24424647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 24424402 - 24424462
Alignment:
| Q |
20 |
aaatgtaggtgacttctatttcctacctaccaggaatactgacacaaaccatctaccatta |
80 |
Q |
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| T |
24424402 |
aaatgtaggtgacttctatttcctacctaccaggaatactgacacaaaccatctaccatta |
24424462 |
T |
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