View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8252_high_9 (Length: 240)
Name: NF8252_high_9
Description: NF8252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8252_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 42238210 - 42238422
Alignment:
| Q |
17 |
aggtatcgccacccttgtcgccgctgttagcaacctttccggtgccattcactcattcattaattctgaacaccatggccaaagataaatattaagtaat |
116 |
Q |
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| T |
42238210 |
aggtatcgccacccttgtcgccgctgttagcaacctttccggtgccattcactcattcattaattctgaacaccatggccaaagataaatattaagtaat |
42238309 |
T |
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| Q |
117 |
atatgctagcttatcgatcttataatttattattgtgtgatttagaaaatcgtataatatttattggtcatgcattctttcacccacttataattcaatt |
216 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
42238310 |
atatgctagcttatcgatcttatagtttattactgtgtgatttagaaaatcgtataatatttattggtgatgcattctttcacccacttataattcattt |
42238409 |
T |
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| Q |
217 |
gtagtctagtatt |
229 |
Q |
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||||||||||||| |
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| T |
42238410 |
gtagtctagtatt |
42238422 |
T |
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