View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8252_low_10 (Length: 260)

Name: NF8252_low_10
Description: NF8252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8252_low_10
NF8252_low_10
[»] chr2 (5 HSPs)
chr2 (30-241)||(20927123-20927334)
chr2 (32-241)||(20953047-20953256)
chr2 (30-229)||(20934507-20934706)
chr2 (30-200)||(20923530-20923700)
chr2 (32-200)||(39274104-39274275)
[»] chr1 (12 HSPs)
chr1 (32-224)||(4334787-4334979)
chr1 (31-241)||(4322880-4323093)
chr1 (39-221)||(3361780-3361962)
chr1 (88-219)||(3378845-3378976)
chr1 (109-222)||(2006583-2006696)
chr1 (39-219)||(2012006-2012186)
chr1 (112-200)||(3340646-3340734)
chr1 (109-219)||(2019879-2019989)
chr1 (121-221)||(3218303-3218403)
chr1 (44-197)||(3372757-3372910)
chr1 (109-221)||(2010666-2010778)
chr1 (71-100)||(3345078-3345107)
[»] chr5 (1 HSPs)
chr5 (30-159)||(17969914-17970043)
[»] chr4 (1 HSPs)
chr4 (109-200)||(21237667-21237758)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 20927123 - 20927334
Alignment:
Q  30 tgttgatcagtggattcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagagggatactacaagataccttggtgcttattc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20927123 tgttgatcagtggattcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagagggatactccaagataccttggtgcttattc 20927222  T
Q  130 tcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagagtttgaagagtcttgatctgaatc 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20927223 tcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaagctttaagagtttgaagagtcttgatctgaatc 20927322  T
Q  230 tagtaacagtgg 241  Q
    ||||||||||||    
T  20927323 tagtaacagtgg 20927334  T

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Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 32 - 241
Target Start/End: Original strand, 20953047 - 20953256
Alignment:
Q  32 ttgatcagtggattcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagagggatactacaagataccttggtgcttattctc 131  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||    
T  20953047 ttgatcggtggattcttcatctaactagaagctctattaaagagcttgtgctgaaattttggatagcgggatactacaagataccttggtgcttattctc 20953146  T
Q  132 ttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagagtttgaagagtcttgatctgaatcta 231  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20953147 ttgtcaaagtttacatcatttgaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagaggttgaagagtcttgatctgaatcta 20953246  T
Q  232 gtaacagtgg 241  Q
    ||||||||||    
T  20953247 gtaacagtgg 20953256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 20934507 - 20934706
Alignment:
Q  30 tgttgatcagtggattcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagagggatactacaagataccttggtgcttattc 129  Q
    ||||||||||||||||||  |||||| ||| |  ||||||||||||||||||||||| ||||| | ||||| |  |||||||||||||||||||||||||    
T  20934507 tgttgatcagtggattctatatctaagtaggaagtctattaaagagcttgtgctggatgtttgtacagaggaactctacaagataccttggtgcttattc 20934606  T
Q  130 tcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagagtttgaagagtcttgatctgaatc 229  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||  |||| ||||||||| ||| ||||| ||||||||||||||||    
T  20934607 tcttgtcaaagtttacatcatttgaaattacatttctgttgtcttaaacctccaacgttgtttaaaggctttaggagcttgaaaagtcttgatctgaatc 20934706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 20923530 - 20923700
Alignment:
Q  30 tgttgatcagtggattcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagagggatactacaagataccttggtgcttattc 129  Q
    |||||||| |||||||||||||||||| ||||| ||||||||| | |||| ||||||  ||||| | |||  |  ||| || ||||||||||||||||||    
T  20923530 tgttgatcggtggattcttcatctaacaagaaggtctattaaaaatcttgagctggacatttggttcgagcaacgctataacataccttggtgcttattc 20923629  T
Q  130 tcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctt 200  Q
    |||||||||||||||||||||||||| ||   ||| | ||  |||||||||||| ||| ||||||||||||    
T  20923630 tcttgtcaaagtttacatcatttaaatttgttttgttcttcgcttaaacctccagcgatgtttgaaggctt 20923700  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 200
Target Start/End: Original strand, 39274104 - 39274275
Alignment:
Q  32 ttgatcagtggattcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagagg--gata-ctacaagataccttggtgcttatt 128  Q
    |||||| ||||||| || ||||||   |||| ||||||||||||||||||||| | |||| |  |||||  || | ||| ||||||||||||||||||||    
T  39274104 ttgatcggtggattgtttatctaatcggaaggtctattaaagagcttgtgctgcatgttttggcagaggatgaaatctataagataccttggtgcttatt 39274203  T
Q  129 ctcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctt 200  Q
    ||| ||||||||||| || | |||||| ||   ||| ||||| |||||||||||||| || |||||||||||    
T  39274204 ctcctgtcaaagtttgcaacgtttaaagttggcttgttgttggcttaaacctccaacaacatttgaaggctt 39274275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 4334979 - 4334787
Alignment:
Q  32 ttgatcagtggattcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagagggatactacaagataccttggtgcttattctc 131  Q
    |||||| ||||||||||||||||| | |||| |||||||||||||||||| |||||||||||||||| |  ||||||||| |||||||||| ||||||||    
T  4334979 ttgatcggtggattcttcatctaattggaaggtctattaaagagcttgtgttggaagtttggatagatgattactacaagttaccttggtgtttattctc 4334880  T
Q  132 ttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagagtttgaagagtcttgatct 224  Q
     |||||||||||||||  |||||||||| || ||||||  |||||||||||||||| ||||||||||||||  |  ||||| |||||||||||    
T  4334879 atgtcaaagtttacattctttaaaattaaatgggtgtttgcttaaacctccaacgatgtttgaaggctttagaaacttgaaaagtcttgatct 4334787  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 241
Target Start/End: Complemental strand, 4323093 - 4322880
Alignment:
Q  31 gttgatcagtggattcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagag---ggatactacaagataccttggtgcttat 127  Q
    ||||||| |||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||   | ||||||| ||||||||||||| ||||    
T  4323093 gttgatcggtggattctttatctaattggaaggtctattaaagagcttgtgctggaagtttggatagaggaagaatactaccagataccttggtgtttat 4322994  T
Q  128 tctcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagagtttgaagagtcttgatctgaa 227  Q
    |||| ||||||||||||||  | |||||||||   |||||||| ||||||||||| | |  ||||||| |||| |  |  ||||| ||||||||||| ||    
T  4322993 tctcatgtcaaagtttacacaacttaaaattaagatggtgttggcttaaacctccgatggtgtttgaaagcttcagaaacttgaaaagtcttgatctaaa 4322894  T
Q  228 tctagtaacagtgg 241  Q
    ||| || |||||||    
T  4322893 tctggttacagtgg 4322880  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 3361780 - 3361962
Alignment:
Q  39 gtggattcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagagggatactacaagataccttggtgcttattctcttgtcaa 138  Q
    ||||||| |||| |||||  ||||  ||||||||||| |||||||| |  ||||| |||| | |  ||| ||||| ||||||||||||||||||||||||    
T  3361780 gtggattattcacctaacccgaaggcctattaaagagtttgtgctgcacatttggttagacgaacgctataagatcccttggtgcttattctcttgtcaa 3361879  T
Q  139 agtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagagtttgaagagtcttga 221  Q
    ||||||||||||||| ||||| | || ||||| |||||||||||||| |||||||||||||| ||||  ||||| ||||||||    
T  3361880 agtttacatcatttagaattaaaatgctgttggcttaaacctccaacaacgtttgaaggcttcaagaacttgaaaagtcttga 3361962  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 3378845 - 3378976
Alignment:
Q  88 gtttggatagagggatactacaagataccttggtgcttattctcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacga 187  Q
    ||||||||||||| ||  || |||||| | |||||||||||||||||||||||||||| ||||||||  ||| |||| ||| | |||||||||||||| |    
T  3378845 gtttggatagaggaatgttataagataacatggtgcttattctcttgtcaaagtttacgtcatttaagcttatattgttgtcgacttaaacctccaacaa 3378944  T
Q  188 cgtttgaaggctttaagagtttgaagagtctt 219  Q
      ||||||||||| |||| |||||| ||||||    
T  3378945 tatttgaaggcttcaagaatttgaaaagtctt 3378976  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 2006583 - 2006696
Alignment:
Q  109 aagataccttggtgcttattctcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagagtt 208  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||  ||||  |||||||||||| ||||| |||||||||| ||||  |    
T  2006583 aagataccttggtgcttattttcttgtcaaagtttacatcatctaacattatattattgtttgcttaaacctccatcgacgattgaaggcttgaagaact 2006682  T
Q  209 tgaagagtcttgat 222  Q
    | || |||||||||    
T  2006683 taaaaagtcttgat 2006696  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 2012006 - 2012186
Alignment:
Q  39 gtggattcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagagggatactacaagataccttggtgcttattctcttgtcaa 138  Q
    ||||||| |||||||||| ||||| ||||| |||||||||||||||| | | | |||||    ||  || |||||||||||||||||||| |||||||||    
T  2012006 gtggatttttcatctaaccagaaggtctatcaaagagcttgtgctgggattatcgataggacaatcatataagataccttggtgcttattttcttgtcaa 2012105  T
Q  139 agtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagagtttgaagagtctt 219  Q
    || |||||| || ||| ||||  ||  ||||  |||||||||||| ||| | |||||||||| ||||  ||||| ||||||    
T  2012106 agcttacattatctaacattattttcttgtttgcttaaacctccatcgatgattgaaggcttgaagaacttgaaaagtctt 2012186  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 3340646 - 3340734
Alignment:
Q  112 ataccttggtgcttattctcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctt 200  Q
    |||||||| ||||||||||||||||||||||| || |||||| || |  |||  ||||| ||||| |||||||||||||||||||||||    
T  3340646 ataccttgctgcttattctcttgtcaaagtttgcaacatttagaactgaattattgttgccttaatcctccaacgacgtttgaaggctt 3340734  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 2019879 - 2019989
Alignment:
Q  109 aagataccttggtgcttattctcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagagtt 208  Q
    |||||||||||||||||||| ||||||||||| |||| |||| |||  |||  ||  ||||  |||||||||||| ||||| |||||||||||||||  |    
T  2019879 aagataccttggtgcttattttcttgtcaaagcttacttcatctaagtttatcttattgtttgcttaaacctccatcgacgattgaaggctttaagaact 2019978  T
Q  209 tgaagagtctt 219  Q
    |||| ||||||    
T  2019979 tgaaaagtctt 2019989  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 3218403 - 3218303
Alignment:
Q  121 tgcttattctcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagagtttgaagagtcttg 220  Q
    ||||| ||||| ||||||||||||||  ||||||||||| | || |||||| || |||||||||| |||||| ||||||| ||||  ||||| |||||||    
T  3218403 tgcttgttctcatgtcaaagtttacagaatttaaaattagactgttgttgtattcaacctccaacaacgtttaaaggcttcaagaacttgaaaagtcttg 3218304  T
Q  221 a 221  Q
    |    
T  3218303 a 3218303  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 3372757 - 3372910
Alignment:
Q  44 ttcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagagggatactacaagataccttggtgcttattctcttgtcaaagttt 143  Q
    ||||||||||| ||||||| ||||| ||||||||| ||||| |  ||||| ||||   |   || |||||||||| | | ||||||||||||||||||||    
T  3372757 ttcttcatctatctagaaggtctataaaagagcttctgctgcacttttggttagacaaacgttataagatacctttgagtttattctcttgtcaaagttt 3372856  T
Q  144 acatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaagg 197  Q
    || ||||||||  |||  ||| |||   ||||||| |||||| |||||||||||    
T  3372857 acgtcatttaagcttatcttgttgtcaacttaaacttccaacaacgtttgaagg 3372910  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 2010666 - 2010778
Alignment:
Q  109 aagataccttggtgcttattctcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagagtt 208  Q
    |||||||||||||||||||| ||||||||||| |||| |||| |||  |||  ||   |||  |||||||||||| ||||  ||| |||||||||||  |    
T  2010666 aagataccttggtgcttattttcttgtcaaagcttacttcatctaagtttatcttatggtttgcttaaacctccatcgacaattgtaggctttaagaact 2010765  T
Q  209 tgaagagtcttga 221  Q
    |||| ||||||||    
T  2010766 tgaaaagtcttga 2010778  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 100
Target Start/End: Complemental strand, 3345107 - 3345078
Alignment:
Q  71 aagagcttgtgctggaagtttggatagagg 100  Q
    ||||||||||||||||||||||||||||||    
T  3345107 aagagcttgtgctggaagtttggatagagg 3345078  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 17969914 - 17970043
Alignment:
Q  30 tgttgatcagtggattcttcatctaactagaagctctattaaagagcttgtgctggaagtttggatagagggatactacaagataccttggtgcttattc 129  Q
    |||||||| ||||||||||||||||||| |||| ||| |||||||||||||| ||||  |||||  || || |  ||| ||||||||||||||||||||     
T  17969914 tgttgatcggtggattcttcatctaactggaagatctgttaaagagcttgtgttggacatttgggcaggggaactctataagataccttggtgcttattt 17970013  T
Q  130 tcttgtcaaagtttacatcatttaaaatta 159  Q
    |||| |||||||||||||||||||||||||    
T  17970014 tcttatcaaagtttacatcatttaaaatta 17970043  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 21237667 - 21237758
Alignment:
Q  109 aagataccttggtgcttattctcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    | ||||| |||||||||||||| ||||||||||||||    
T  21237667 aagataccttggtgcttattctcttgtcaaagtttacatcatttagaattaacaagttgttggcttaaacctccaacaacgtttgaaggctt 21237758  T

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