View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8252_low_13 (Length: 239)
Name: NF8252_low_13
Description: NF8252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8252_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8672702 - 8672925
Alignment:
| Q |
1 |
tcaaaagaaaggaagacaaaaaggaatattaaaatcacctcaagtttgtcttctcttgccctgtgattcttaggaaggcgacgaaactccagttaaaagc |
100 |
Q |
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| T |
8672702 |
tcaaaagaaaggaagacaaaaaggaatattaaaatcacctcaagtttgtcttctcttgccatgtgattcttaggaaggcgacgaaactccagttaaaagc |
8672801 |
T |
|
| Q |
101 |
atgcatatatccacattttctggtgacacaaagtctactgcaacttttgtgcatgactgcaagattttacaatatagtgattaaagttattaactataga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8672802 |
atgcatatatccacattttctggtgacacaaagtctactgcaacttttgtgcatgactgcaagattttacaatatagtgattaaagttattaactataga |
8672901 |
T |
|
| Q |
201 |
ttcagtcaaataatcaaaagatat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
8672902 |
ttcagtcaaataatcaaaagatat |
8672925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8718999 - 8719225
Alignment:
| Q |
1 |
tcaaaagaaaggaagacaaaaaggaatattaaaatcacctcaagtttgtcttctcttgccctgtgattcttaggaaggcgacgaaactc--cagttaaaa |
98 |
Q |
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| T |
8718999 |
tcaaaagaaaggaagacaaaaaggaatattaaaatcacctcaagtttgtcttctcttgccatgtgattcttaggaaggcgacgaaactcttcagttaaaa |
8719098 |
T |
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| Q |
99 |
gcatgcatatatccacattttctggtgacacaaagtctactgcaacttttgtgcatgactgcaagattttacaatatagtgattaaagttattaactata |
198 |
Q |
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| T |
8719099 |
gcatgcatatatccacattttctggtgacacaaagtctactgcaactttcgtgcatgactgcaagattttacaatatagtgattaaagttattaactata |
8719198 |
T |
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| Q |
199 |
gattcagtcaaataatcaaaagatatg |
225 |
Q |
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| T |
8719199 |
gattcagtcaaataatcacaagatatg |
8719225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 8591161 - 8591375
Alignment:
| Q |
1 |
tcaaaagaaaggaagacaaaaaggaatattaaaatcacctcaagtttgtcttctcttgccctgtgattcttaggaaggcgacgaaactc--cagttaaaa |
98 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8591161 |
tcaaaagaaaggaaggcaaaaaggattattaaaatcacctcaagtttgtcttctcttgccctgtgattcttaggaaggcgacgaaactcttcagttaaaa |
8591260 |
T |
|
| Q |
99 |
gcatgcatatatccacattttctggtgacacaaagtctactgcaacttttgtgcatgactgcaagattttacaatatagtgattaaagttattaactata |
198 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
8591261 |
gcatgcagatatccacattttctggtgacacaaagtctgctgcaattttcgtgcatgactgcaagattttacaatatagtgattagagttactaactata |
8591360 |
T |
|
| Q |
199 |
gattcagtcaaataa |
213 |
Q |
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||||||||||||||| |
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| T |
8591361 |
gattcagtcaaataa |
8591375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 5116075 - 5116177
Alignment:
| Q |
115 |
attttctggtgacacaaa-gtctactgcaacttttgtgcatgactgcaagattttacaatatagtgattaaagttattaactatagattcagtcaaataa |
213 |
Q |
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||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| || |||||||| |
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| T |
5116075 |
attttcttgtgacacaaaagtctgcagcaacttttgtgcatgactgcaagattttacaatatagtatttagagttattaaaaatagatacaatcaaataa |
5116174 |
T |
|
| Q |
214 |
tca |
216 |
Q |
| |
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||| |
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|
| T |
5116175 |
tca |
5116177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 55409959 - 55410009
Alignment:
| Q |
113 |
acattttctggtgacacaaagtctactgcaacttttgtgcatgactgcaag |
163 |
Q |
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||||||||||| ||||| |||||||| ||||| |||||||| ||||||||| |
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| T |
55409959 |
acattttctggggacacgaagtctacagcaacctttgtgcacgactgcaag |
55410009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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