View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8252_low_14 (Length: 232)

Name: NF8252_low_14
Description: NF8252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8252_low_14
NF8252_low_14
[»] chr7 (32 HSPs)
chr7 (125-205)||(48705644-48705724)
chr7 (15-89)||(44333147-44333221)
chr7 (19-89)||(48646057-48646127)
chr7 (15-87)||(10899114-10899186)
chr7 (15-89)||(35727707-35727781)
chr7 (15-89)||(7258283-7258357)
chr7 (19-89)||(43457465-43457535)
chr7 (134-205)||(33474361-33474432)
chr7 (15-85)||(8374926-8374996)
chr7 (15-89)||(46286511-46286585)
chr7 (16-89)||(48647485-48647558)
chr7 (27-89)||(21062825-21062887)
chr7 (15-89)||(30925049-30925123)
chr7 (15-89)||(48788713-48788787)
chr7 (22-89)||(48777264-48777331)
chr7 (15-89)||(8375624-8375698)
chr7 (19-89)||(12223744-12223814)
chr7 (15-89)||(34704917-34704991)
chr7 (19-89)||(35729131-35729201)
chr7 (19-81)||(42477397-42477459)
chr7 (19-89)||(44334494-44334564)
chr7 (20-89)||(45583692-45583761)
chr7 (17-57)||(44529068-44529108)
chr7 (19-68)||(13578365-13578414)
chr7 (17-77)||(8048827-8048887)
chr7 (26-89)||(5930184-5930247)
chr7 (19-65)||(7259729-7259775)
chr7 (16-62)||(10894385-10894431)
chr7 (25-100)||(24934799-24934876)
chr7 (19-89)||(39708111-39708181)
chr7 (98-170)||(5082481-5082552)
chr7 (25-77)||(24844593-24844645)
[»] scaffold0045 (2 HSPs)
scaffold0045 (136-204)||(62595-62663)
scaffold0045 (136-204)||(69927-69995)
[»] chr8 (26 HSPs)
chr8 (125-205)||(43819551-43819631)
chr8 (98-205)||(7207194-7207300)
chr8 (19-89)||(32898490-32898560)
chr8 (5-89)||(35178835-35178919)
chr8 (134-204)||(24066973-24067043)
chr8 (19-85)||(35177407-35177473)
chr8 (19-89)||(41754006-41754076)
chr8 (20-70)||(41754841-41754891)
chr8 (142-205)||(617525-617587)
chr8 (142-205)||(623918-623980)
chr8 (134-205)||(42542994-42543065)
chr8 (25-81)||(28005359-28005415)
chr8 (25-81)||(28062662-28062718)
chr8 (18-89)||(1953014-1953084)
chr8 (19-86)||(33314872-33314939)
chr8 (126-172)||(12221022-12221068)
chr8 (25-99)||(59548-59624)
chr8 (20-89)||(30134574-30134643)
chr8 (149-205)||(589943-589998)
chr8 (15-70)||(1951970-1952024)
chr8 (136-175)||(8210174-8210213)
chr8 (137-183)||(4308834-4308880)
chr8 (18-68)||(5965486-5965536)
chr8 (19-89)||(10407629-10407699)
chr8 (136-214)||(27737726-27737803)
chr8 (20-89)||(5738069-5738138)
[»] chr3 (41 HSPs)
chr3 (124-204)||(21814202-21814282)
chr3 (19-89)||(52318362-52318432)
chr3 (140-205)||(1165784-1165849)
chr3 (136-205)||(15502652-15502721)
chr3 (15-89)||(2591635-2591709)
chr3 (19-89)||(2592052-2592122)
chr3 (15-89)||(48572993-48573067)
chr3 (137-205)||(41998907-41998975)
chr3 (15-65)||(11773092-11773142)
chr3 (19-89)||(17700526-17700596)
chr3 (22-88)||(19331117-19331183)
chr3 (19-89)||(33428480-33428550)
chr3 (15-89)||(34263813-34263887)
chr3 (15-89)||(36278960-36279034)
chr3 (19-89)||(45600983-45601053)
chr3 (136-205)||(15005830-15005899)
chr3 (20-89)||(55388081-55388150)
chr3 (19-89)||(17701964-17702034)
chr3 (19-89)||(19114541-19114611)
chr3 (15-89)||(47118092-47118166)
chr3 (124-205)||(3084012-3084092)
chr3 (18-89)||(52316987-52317058)
chr3 (19-89)||(19115191-19115261)
chr3 (15-89)||(50753825-50753899)
chr3 (19-88)||(20464078-20464147)
chr3 (20-83)||(48808380-48808443)
chr3 (31-89)||(47428614-47428672)
chr3 (19-89)||(55389514-55389584)
chr3 (19-72)||(47427885-47427938)
chr3 (5-89)||(3671047-3671130)
chr3 (25-89)||(47075402-47075466)
chr3 (136-207)||(21195293-21195364)
chr3 (15-58)||(36280358-36280401)
chr3 (25-60)||(49261585-49261620)
chr3 (18-89)||(53957683-53957753)
chr3 (139-206)||(54143822-54143889)
chr3 (141-195)||(22455369-22455423)
chr3 (137-183)||(34060804-34060850)
chr3 (19-49)||(48574504-48574534)
chr3 (134-183)||(28954253-28954302)
chr3 (20-61)||(53959146-53959187)
[»] chr1 (26 HSPs)
chr1 (134-205)||(51046657-51046728)
chr1 (15-81)||(7945595-7945661)
chr1 (136-205)||(32268033-32268102)
chr1 (15-85)||(5782426-5782496)
chr1 (18-89)||(32665814-32665885)
chr1 (19-89)||(10332994-10333064)
chr1 (124-205)||(13925101-13925181)
chr1 (15-77)||(52440600-52440662)
chr1 (16-89)||(52439487-52439560)
chr1 (19-83)||(7944169-7944233)
chr1 (22-86)||(9339657-9339721)
chr1 (15-58)||(9341066-9341109)
chr1 (15-89)||(6612427-6612501)
chr1 (16-89)||(22856688-22856761)
chr1 (124-172)||(12173173-12173221)
chr1 (142-205)||(1107399-1107462)
chr1 (19-70)||(5783154-5783205)
chr1 (15-70)||(10333227-10333282)
chr1 (98-172)||(46289632-46289705)
chr1 (144-204)||(3894800-3894861)
chr1 (15-87)||(1001164-1001236)
chr1 (15-46)||(6614020-6614051)
chr1 (136-182)||(27210749-27210795)
chr1 (137-199)||(41898878-41898940)
chr1 (29-89)||(8975167-8975227)
chr1 (25-89)||(11060835-11060899)
[»] chr6 (10 HSPs)
chr6 (15-89)||(30748007-30748081)
chr6 (124-205)||(1947417-1947498)
chr6 (125-201)||(16441809-16441885)
chr6 (142-205)||(19646027-19646090)
chr6 (20-89)||(31218963-31219032)
chr6 (20-89)||(31219206-31219275)
chr6 (142-205)||(5138503-5138565)
chr6 (15-64)||(6468822-6468871)
chr6 (142-199)||(27127529-27127586)
chr6 (25-89)||(23507957-23508020)
[»] chr2 (29 HSPs)
chr2 (15-89)||(24459487-24459561)
chr2 (19-89)||(31091572-31091642)
chr2 (19-89)||(32766284-32766354)
chr2 (16-89)||(40000376-40000449)
chr2 (134-205)||(7888572-7888643)
chr2 (18-89)||(39015013-39015084)
chr2 (15-89)||(2910108-2910182)
chr2 (15-86)||(17330271-17330342)
chr2 (15-85)||(31090176-31090246)
chr2 (142-205)||(10824259-10824322)
chr2 (15-89)||(24458068-24458142)
chr2 (18-89)||(34037717-34037788)
chr2 (19-89)||(32764946-32765016)
chr2 (144-205)||(803919-803980)
chr2 (15-76)||(17466869-17466930)
chr2 (19-89)||(39016424-39016496)
chr2 (134-180)||(445602-445648)
chr2 (19-89)||(5915037-5915107)
chr2 (25-66)||(15442022-15442063)
chr2 (19-55)||(14704048-14704084)
chr2 (31-100)||(14887555-14887626)
chr2 (134-205)||(6975849-6975919)
chr2 (15-89)||(21733812-21733889)
chr2 (137-183)||(33726405-33726451)
chr2 (137-182)||(2239607-2239652)
chr2 (25-103)||(12746252-12746332)
chr2 (5-61)||(7073675-7073731)
chr2 (19-67)||(7412122-7412170)
chr2 (25-89)||(34582721-34582785)
[»] scaffold0169 (1 HSPs)
scaffold0169 (136-204)||(9025-9093)
[»] chr5 (25 HSPs)
chr5 (22-89)||(28591162-28591229)
chr5 (19-89)||(8074459-8074529)
chr5 (5-77)||(25590451-25590522)
chr5 (15-89)||(9538090-9538164)
chr5 (27-89)||(13651173-13651234)
chr5 (19-89)||(18400198-18400268)
chr5 (19-89)||(21069297-21069367)
chr5 (20-76)||(19182971-19183027)
chr5 (19-89)||(546081-546150)
chr5 (19-89)||(4592869-4592939)
chr5 (19-87)||(9537033-9537101)
chr5 (19-89)||(2464677-2464747)
chr5 (15-89)||(16611736-16611810)
chr5 (27-89)||(40612712-40612774)
chr5 (5-76)||(8075864-8075935)
chr5 (30-89)||(14891199-14891258)
chr5 (134-201)||(28782706-28782773)
chr5 (19-89)||(2466819-2466889)
chr5 (19-51)||(4594144-4594176)
chr5 (149-205)||(10317259-10317315)
chr5 (15-59)||(19186261-19186305)
chr5 (19-78)||(544668-544726)
chr5 (19-70)||(32640315-32640366)
chr5 (19-89)||(16979000-16979070)
chr5 (52-89)||(24900410-24900447)
[»] chr4 (19 HSPs)
chr4 (19-89)||(31844730-31844800)
chr4 (25-89)||(53771100-53771164)
chr4 (134-201)||(45674181-45674248)
chr4 (5-100)||(47874559-47874656)
chr4 (19-89)||(47878529-47878599)
chr4 (124-205)||(4867785-4867866)
chr4 (20-89)||(42278057-42278126)
chr4 (19-100)||(42391933-42392016)
chr4 (18-89)||(53770341-53770412)
chr4 (20-70)||(54574452-54574502)
chr4 (134-191)||(45683989-45684046)
chr4 (18-89)||(4703261-4703332)
chr4 (20-87)||(39868932-39868999)
chr4 (15-89)||(19051272-19051346)
chr4 (15-89)||(26172983-26173057)
chr4 (19-89)||(48740065-48740135)
chr4 (45-85)||(26685488-26685528)
chr4 (98-172)||(35911151-35911224)
chr4 (19-85)||(44158516-44158582)
[»] scaffold0034 (1 HSPs)
scaffold0034 (19-89)||(116063-116133)
[»] scaffold0209 (1 HSPs)
scaffold0209 (142-205)||(29349-29411)
[»] scaffold0039 (3 HSPs)
scaffold0039 (19-85)||(74358-74424)
scaffold0039 (19-85)||(79085-79151)
scaffold0039 (18-89)||(79727-79798)
[»] scaffold0016 (1 HSPs)
scaffold0016 (25-100)||(36574-36650)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 48705644 - 48705724
Alignment:
Q  125 gaaattattactttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    |||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  48705644 gaaattacaactttttaacttttagaaagttgaattcaacacttttcaccatttttcaacaaattatttctatttatgttc 48705724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 44333221 - 44333147
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  44333221 cagagacttatttgtatttaatcatgagtcagggacctatgtgacagcgaggtgcagagtcagggaccaaagtga 44333147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 48646127 - 48646057
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  48646127 gacttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcatagtcagggaccaaagtga 48646057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 10899114 - 10899186
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagt 87  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  10899114 cagagacttatttgtatttaatcctgggtcaaggatctatgtgacagcgaggtgcagagtcagggaccaaagt 10899186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 35727781 - 35727707
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||||||    
T  35727781 cagagacttatttatatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcagggatcaaagtga 35727707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 7258357 - 7258283
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| | |||||||||| |||||||    
T  7258357 cagagacttatttgtatttaatcctgagttagggacctatgtgacaacgaggtgtagagtcagggaccaaagtga 7258283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 43457535 - 43457465
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| |||| | ||||||||||||||||    
T  43457535 gacttatttgtatttaatcctgagtcagggacctatgcgacagcgagctgcagaatcagggactaaagtga 43457465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 33474361 - 33474432
Alignment:
Q  134 actttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||| |||||||||||||||||||||||| ||||||  ||||||||| ||||||||||||||| |||||    
T  33474361 actttttgacttttagaaagttgaattcaacacttttcataatttttcaacaaattatttctatttttgttc 33474432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 8374996 - 8374926
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaa 85  Q
    |||| |||| |||||||||||| ||||||||| || |||||||||||||||||||| ||||||||||||||    
T  8374996 cagaaacttttttgtatttaattctgagtcagagacctatgtgacagcgaggtgcagagtcagggactaaa 8374926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 46286585 - 46286511
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||||||||||| || | | |||||||| || | ||||||||||||||||||    
T  46286585 cagagacttatttgtatttaatcctgagtcagggacctttctaacagcgagatgaagagtcagggactaaagtga 46286511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 48647485 - 48647558
Alignment:
Q  16 agagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||| || | | |||||| |||||||||    
T  48647485 agagacttatttgtatttaatcctgagtcagggacctatgtgatagcgagctgtagaatcagggtctaaagtga 48647558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 21062887 - 21062825
Alignment:
Q  27 tgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||| ||| || | ||||||||||||||| ||||||||||||||||||    
T  21062887 tgtatttaatcctgagtcaaggacctttatgacagcgaggtgcaaagtcagggactaaagtga 21062825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 30925049 - 30925123
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| | ||| |||| | ||||||| ||||||||    
T  30925049 cagagacttatttgtatttaatcctgagtcaaggacctatgtgactgggagctgcagaatcagggattaaagtga 30925123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 48788713 - 48788787
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||| ||||||||  ||||||||||| |||||||||||||||||||| ||||| |||  |||||||    
T  48788713 cagagacttatttatatttaattatgagtcagggacctatgtgacagcgaggtgcaaagtcaaggatcaaagtga 48788787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 48777331 - 48777264
Alignment:
Q  22 ttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||| |||||||||||  |||||||||||||| |||| | |||| |||||||||||    
T  48777331 ttatttgtatttaatcatgagtcagggacttatgtgacagcgagctgcagaatcagagactaaagtga 48777264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 8375624 - 8375698
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||| |||| ||||||||||||| ||||||||||| ||||||||||| | |||||  ||||||||||||| ||||    
T  8375624 cagaaacttctttgtatttaatcatgagtcagggacctatgtgacagtgcggtgcgaagtcagggactaatgtga 8375698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 12223744 - 12223814
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||  || |||||  |||||||||||||||||    
T  12223744 gacttctttatatttaatcctgagtcagggacctatgtgacattgatgtgcagtgtcagggactaaagtga 12223814  T

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Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 34704991 - 34704917
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||| |||||||||||||||||||||| |  || ||||||| ||||||||| |||| | |||||||||||    
T  34704991 cagagacttctttgtatttaatcctgagtcagaggcctttgtgacaacgaggtgcagagtcggagactaaagtga 34704917  T

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Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 35729131 - 35729201
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||| ||||||| ||||| ||| ||||||||||||||| |||| | ||||||| ||||||||    
T  35729131 gacttatttgtatgtaatcctaagtcaaggacctatgtgacagcgagctgcaaaatcagggaataaagtga 35729201  T

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Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 42477459 - 42477397
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggac 81  Q
    |||||||||||||||||||||||||||| || ||||| |||| ||||||||| ||||| ||||    
T  42477459 gacttatttgtatttaatcctgagtcagagacctatgcgacaacgaggtgcagagtcaaggac 42477397  T

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Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 44334494 - 44334564
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||| ||||||||| ||||||||||| |||||| |||||||| |||| | ||||| ||||||||||    
T  44334494 gacttatttatatttaatcatgagtcagggacctatgtaacagcgagctgcagaatcaggaactaaagtga 44334564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 45583761 - 45583692
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||| |||||||||| |||||||||||| |||||||| |||||  |||| | ||||||||||||||||    
T  45583761 acttatctgtatttaattctgagtcagggacctatgtgatagcgaactgcagaatcagggactaaagtga 45583692  T

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Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 44529108 - 44529068
Alignment:
Q  17 gagacttatttgtatttaatcctgagtcagggatctatgtg 57  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  44529108 gagacttatttgtatttaatcatgagtcagggatctatgtg 44529068  T

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Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 13578365 - 13578414
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtg 68  Q
    |||||||||||||||||| ||||||||| ||||| | |||||||||||||    
T  13578365 gacttatttgtatttaattctgagtcagtgatctttatgacagcgaggtg 13578414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 8048827 - 8048887
Alignment:
Q  17 gagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcag 77  Q
    ||||||| ||||||||||||| |||||||| || || |||| |||||||||||| ||||||    
T  8048827 gagacttctttgtatttaatcttgagtcagagacctttgtgtcagcgaggtgcagagtcag 8048887  T

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Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 5930184 - 5930247
Alignment:
Q  26 ttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||| ||||| || ||||| ||||| ||||| ||| || |||||||||||    
T  5930184 ttgtatttaatcctgagttagggacctttgtgatagcgaagtgcaaagtaagagactaaagtga 5930247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 7259729 - 7259775
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 65  Q
    ||||||||||||||||||||||| |||| || | |||||||||||||    
T  7259729 gacttatttgtatttaatcctgaatcagagacccatgtgacagcgag 7259775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 10894431 - 10894385
Alignment:
Q  16 agagacttatttgtatttaatcctgagtcagggatctatgtgacagc 62  Q
    |||||||||||| ||||||||| ||||||||||| |||||| |||||    
T  10894431 agagacttatttatatttaatcttgagtcagggacctatgtaacagc 10894385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 24934876 - 24934799
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga--atttactcaaa 100  Q
    ||||||||||||||| |||||| || || |||||||||||  |||| ||| |||||| |||||||  |||||||||||    
T  24934876 tttgtatttaatcctaagtcagagacctttgtgacagcgatatgcagagttagggaccaaagtgaccatttactcaaa 24934799  T

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Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 39708181 - 39708111
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| |||||||| |||| ||||||| ||| || |||||| ||||||| || |||||| |||||||||||    
T  39708181 gacttctttgtattcaatcttgagtcatggacctttgtgacggcgaggtacagagtcagagactaaagtga 39708111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 5082481 - 5082552
Alignment:
Q  98 aaactaaaagtaataattttgcacccggaaattattactttttaacttttagaaagttgaattcaacattttt 170  Q
    |||||||||||| || |||||||   ||||||||  ||||||| ||||||| |||||||||||||||| ||||    
T  5082481 aaactaaaagtagtagttttgcatt-ggaaattacaactttttgacttttaaaaagttgaattcaacactttt 5082552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 24844645 - 24844593
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcag 77  Q
    ||||||||||||||||||| | ||| ||  |||||||||||||||| ||||||    
T  24844645 tttgtatttaatcctgagttatggaccttggtgacagcgaggtgcagagtcag 24844593  T

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Target: scaffold0045 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 62663 - 62595
Alignment:
Q  136 tttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgtt 204  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  62663 tttttaacttttagaaagttgaattcaacacttttcaccatttttcaaaaaattatttctatttatgtt 62595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 69995 - 69927
Alignment:
Q  136 tttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgtt 204  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  69995 tttttaacttttagaaagttgaattcaacacttttcaccatttttcaaaaaattatttctatttatgtt 69927  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 43819551 - 43819631
Alignment:
Q  125 gaaattattactttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    |||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||    
T  43819551 gaaattacaactttttgacttttagaaagttgaattcaacatttttcatcatttttcaacaaattatttctattcatgttc 43819631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 205
Target Start/End: Original strand, 7207194 - 7207300
Alignment:
Q  98 aaactaaaagtaataattttgcacccggaaattattactttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctat 197  Q
    |||||||||||| ||||||||||   |||| |||  ||||||||||||||||||| |||||||||||| |||||| |||||||||| ||||||||| |||    
T  7207194 aaactaaaagtagtaattttgcattgggaa-ttacaactttttaacttttagaaatttgaattcaacacttttcatcatttttcaacaaattatttatat 7207292  T
Q  198 ttatgttc 205  Q
    ||||||||    
T  7207293 ttatgttc 7207300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 32898490 - 32898560
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||| |||| ||||||||||||||||||    
T  32898490 gacttatttgtatttaatcctaagtcagggacctatgtgacagtgagttgcagagtcagggactaaagtga 32898560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 35178835 - 35178919
Alignment:
Q  5 agtggagaagcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||| | || ||||||||| ||||| |||||||||| |||||||    
T  35178835 agtgcagaatcagggacttatttgtatttaatcctgagtcagggaccaatatgacagcgatgtgcagagtcagggaccaaagtga 35178919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 24066973 - 24067043
Alignment:
Q  134 actttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgtt 204  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||  ||| ||||||||| ||||||||||    
T  24066973 actttttaacttttagaaggttgaattcaacacttttcaccatttcccaacaaattatttatatttatgtt 24067043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 35177473 - 35177407
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaa 85  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||| |||| | | ||||||||||    
T  35177473 gacttatttgtatttaatccggagtcagggacctatgtgacagcgagctgcagaattagggactaaa 35177407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 41754076 - 41754006
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||| ||||||| |  |||||||||||||||    
T  41754076 gacttgtttatatttaatcctgagtcagggacctatgtgacagcaaggtgcagaaccagggactaaagtga 41754006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 41754841 - 41754891
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgca 70  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  41754841 acttgtttgtatttaatcctgagtcagagatctatgtgacagcgaggtgca 41754891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 617525 - 617587
Alignment:
Q  142 acttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||||||||||||| ||||||| ||||||||||| || ||||||||| |||||||||||    
T  617525 acttttagaaagttgaatt-aacatttctcaccattttttaacaaattatttttatttatgttc 617587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 623918 - 623980
Alignment:
Q  142 acttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||||||||||||| ||||||| ||||||||||| || ||||||||| |||||||||||    
T  623918 acttttagaaagttgaatt-aacatttctcaccattttttaacaaattatttttatttatgttc 623980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 42542994 - 42543065
Alignment:
Q  134 actttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||| ||||||||| |||||||||||||| ||||||| |||||| || ||||| ||| |||||||||||    
T  42542994 acttttttacttttagagagttgaattcaacacttttcactatttttaaacaaattgtttttatttatgttc 42543065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 28005415 - 28005359
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggac 81  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||| | ||||||||||    
T  28005415 tttgtatttgatcctgagtcagggatctttgtgacaacgaggtgtagagtcagggac 28005359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 28062718 - 28062662
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggac 81  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||| | ||||||||||    
T  28062718 tttgtatttgatcctgagtcagggatctttgtgacaacgaggtgtagagtcagggac 28062662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 1953014 - 1953084
Alignment:
Q  18 agacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||| ||||||| |||||| ||||||| ||||| |||| |||| | ||||||||||||||||    
T  1953014 agacttatttgtatgtaatcct-agtcagagatctatatgacaacgagctgcagaatcagggactaaagtga 1953084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 33314939 - 33314872
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaag 86  Q
    ||||||||||||||||||| |||||||| || || || |||||||||||||| ||| |||||| ||||    
T  33314939 gacttatttgtatttaatcttgagtcagagacctttgagacagcgaggtgcaaagtaagggaccaaag 33314872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 12221022 - 12221068
Alignment:
Q  126 aaattattactttttaacttttagaaagttgaattcaacatttttca 172  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||||    
T  12221022 aaattataacttttaaacttttaaaaagttgaattcaacatttttca 12221068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 59624 - 59548
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga--atttactcaa 99  Q
    |||||| || |||||||||||||||   | |||||||||||||| | ||||||||||||||||||  ||||||||||    
T  59624 tttgtagtttatcctgagtcagggactaaagtgacagcgaggtgtaaagtcagggactaaagtgactatttactcaa 59548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 30134643 - 30134574
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||| ||||||||||||| |||||  |||| || ||||||||||||||||| ||| | ||||||||||||    
T  30134643 acttctttgtatttaatcatgagtaggggacctttgtgacagcgaggtgcagagttaaggactaaagtga 30134574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 589998 - 589943
Alignment:
Q  149 gaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    |||||||||||| ||||||| ||||||||||| || ||||||||| |||||||||||    
T  589998 gaaagttgaatt-aacatttctcaccattttttaacaaattatttttatttatgttc 589943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 1952024 - 1951970
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgca 70  Q
    |||| |||||||||||||||||||||||||| |||||||||| | ||| |||||||    
T  1952024 cagaaacttatttgtatttaatcctgagtca-ggatctatgtaatagcaaggtgca 1951970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 8210174 - 8210213
Alignment:
Q  136 tttttaacttttagaaagttgaattcaacatttttcacca 175  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  8210174 tttttaacttttaaaaagttgaattcatcatttttcacca 8210213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 4308834 - 4308880
Alignment:
Q  137 ttttaacttttagaaagttgaattcaacatttttcaccatttttcaa 183  Q
    |||||||||||| |||||| |||||| ||||||| ||||||||||||    
T  4308834 ttttaacttttataaagttaaattcatcattttttaccatttttcaa 4308880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 5965486 - 5965536
Alignment:
Q  18 agacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtg 68  Q
    |||||| |||||||||||||||||||||||||  | ||||||| |||||||    
T  5965486 agacttctttgtatttaatcctgagtcagggacatttgtgacaacgaggtg 5965536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 10407629 - 10407699
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||| ||||||||| |||||  || ||||||||||| ||| |||| | |||| |||||||||||    
T  10407629 gacttatttgtgtttaatcctaagtcaatgacctatgtgacagtgagctgcagaatcagagactaaagtga 10407699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 27737803 - 27737726
Alignment:
Q  136 tttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttcctcttaact 214  Q
    ||||| |||||||||||||| ||||||||| |||| |  |||||| || | |||||||||| ||||||| |||||||||    
T  27737803 tttttgacttttagaaagttaaattcaacacttttaattattttttaacatattatttctaattatgtt-ctcttaact 27737726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 5738069 - 5738138
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||| ||||||||||||| ||||||| ||| |||||| ||| |||  |||| ||||||| ||||||||||    
T  5738069 acttctttgtatttaatcttgagtcatggacctatgtcacaacgatatgcaaagtcaggaactaaagtga 5738138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 21814202 - 21814282
Alignment:
Q  124 ggaaattattactttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgtt 204  Q
    ||||||||| ||||||| ||||||||||| |||||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  21814202 ggaaattataactttttgacttttagaaaattgaattcaacacttttcaccacttttcaacaaattatttctatttatgtt 21814282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 52318362 - 52318432
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||||||    
T  52318362 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaagtgcagagtcagagaccaaagtga 52318432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 1165784 - 1165849
Alignment:
Q  140 taacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||    
T  1165784 taacttttagaaagttgaattcaacatttttcatcacttttcaacaaattatttctatttatgttc 1165849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 15502721 - 15502652
Alignment:
Q  136 tttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||    
T  15502721 tttttaacttttaaaaagttgaattcaacattttttaccatttttcaacaaattatttctatttttgttc 15502652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 2591709 - 2591635
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||| || |||| | ||||||||||||||||    
T  2591709 cagagacttgtttgtatttaatcctgagtcagggacctatgtgacagcaagctgcagaatcagggactaaagtga 2591635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 2592052 - 2592122
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||| | | ||||||||||||||    
T  2592052 gacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaattagggactaaagtga 2592122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 48573067 - 48572993
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||| |||||||||| |||||||    
T  48573067 cagaggcttatttgtatttaatcctgagtcagggacctatgtgataacgaggtgcagagtcagggaccaaagtga 48572993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 41998907 - 41998975
Alignment:
Q  137 ttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    |||| ||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||    
T  41998907 tttttacttttataaagttgaatttaacacttttcaccatttttcaacaaattatttctatttatgttc 41998975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 11773092 - 11773142
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 65  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11773092 cagagacttatttgtatttaatcctgagtcagggacctatgtgacagcgag 11773142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 17700596 - 17700526
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||||  |||||||||||    
T  17700596 gacttatttgtatttaatcctgagtcaggaacctatgtgacaacgaggtgcagagtcaaagactaaagtga 17700526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 19331183 - 19331117
Alignment:
Q  22 ttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtg 88  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| || ||||||    
T  19331183 ttatttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcaggaacgaaagtg 19331117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 33428480 - 33428550
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| |||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||| |||||||    
T  33428480 gacttctttgtatttaattctgagtcagggacctatgtgacaacgaggtgcagagtcagggacgaaagtga 33428550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 34263887 - 34263813
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| |||||||| | |||||||    
T  34263887 cagagacttatttgtatttaatcctgaatcaaggacctctgtgacagcgaggtgcagagtcaggggccaaagtga 34263813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 36279034 - 36278960
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| |||| || | | ||||||||||||||||    
T  36279034 cagagacttatttgtatttaatcctgaatcagggacctatgtgacaacgagctgtataatcagggactaaagtga 36278960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 45600983 - 45601053
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||||||  || ||||||||||||||||||    
T  45600983 gacttctttgtatttaatcctgaatcagggacctatgtgacagcgagggacagagtcagggactaaagtga 45601053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 15005830 - 15005899
Alignment:
Q  136 tttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||||||| |||||||||||||||| |||| |||||||||| | ||||||||||| |||||||||    
T  15005830 tttttaacttttacaaagttgaattcaacactttttaccatttttccataaattatttctgtttatgttc 15005899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 55388150 - 55388081
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||| || |||| |||||||||| |||| | ||||||||||||||||    
T  55388150 acttatttgtatttaatcctgagtcagagacctatatgacagcgagctgcagaatcagggactaaagtga 55388081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 17701964 - 17702034
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||| |||| | |||| |||||||||||    
T  17701964 gacttatttgtatttaatcttgagtcagggacctatatgacagcgagctgcagaatcagagactaaagtga 17702034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 19114611 - 19114541
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| ||||||||||||| ||||||||||| || ||||||| ||| ||||| ||||||||||||||||||    
T  19114611 gacttctttgtatttaatcttgagtcagggacctctgtgacaacgaagtgcagagtcagggactaaagtga 19114541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 47118092 - 47118166
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||| |||| ||||||||||||||| ||||  ||| ||||| ||||||||| ||||||||||||||||||    
T  47118092 cagagacttctttgcatttaatcctgagtcggggacttatatgacaacgaggtgcagagtcagggactaaagtga 47118166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 3084012 - 3084092
Alignment:
Q  124 ggaaattattactttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||  ||||||||| |||||||||||| || |||||| |||| |||||||||||| ||||||| |||||||||||||    
T  3084012 ggaaattacaactttttaa-ttttagaaagttaaactcaacactttttaccatttttcaacaaattatatctatttatgttc 3084092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 52317058 - 52316987
Alignment:
Q  18 agacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||| |||||||| || |||| |||||||||| |||| | |||| |||||||||||    
T  52317058 agacttatttgtatttaatcatgagtcagagacctatatgacagcgagctgcagaatcagagactaaagtga 52316987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 19115191 - 19115261
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| ||||||||||||||||||| | ||| |||||||||| ||||||||| ||||| | ||||||||||    
T  19115191 gacttctttgtatttaatcctgagtgaaggacctatgtgacatcgaggtgcagagtcacgaactaaagtga 19115261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 50753899 - 50753825
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||| |||| ||| ||||||||||||| | ||||| |||||||||||||||||||| ||  ||||||||||||||    
T  50753899 cagaaacttgtttatatttaatcctgaattagggacctatgtgacagcgaggtgcagagctagggactaaagtga 50753825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 20464147 - 20464078
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtg 88  Q
    ||||| ||||||||||||| |||| |||||| || ||||||| ||||||||| |||| ||||||||||||    
T  20464147 gacttctttgtatttaatcatgagccagggacctttgtgacaacgaggtgcagagtcggggactaaagtg 20464078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 48808443 - 48808380
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggacta 83  Q
    ||||||||||||||||||||||||||| || |||| | |||||||| |||| | ||||||||||    
T  48808443 acttatttgtatttaatcctgagtcagagacctatctaacagcgagctgcagaatcagggacta 48808380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 47428614 - 47428672
Alignment:
Q  31 tttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||| ||||||| ||| ||||||||||| |||||||| ||||||||| ||||||||    
T  47428614 tttaatcttgagtcacggacctatgtgacagagaggtgcaaagtcagggattaaagtga 47428672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 55389514 - 55389584
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||| |||||||||||  |||||||  || |||||||||||||||||||| ||| |||||| |||||||    
T  55389514 gacttaattgtatttaattttgagtcaatgacctatgtgacagcgaggtgcagagttagggaccaaagtga 55389584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 47427938 - 47427885
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcaca 72  Q
    ||||| ||||||||||||  ||||||| ||| ||||||||||||||||||||||    
T  47427938 gacttctttgtatttaattttgagtcaaggacctatgtgacagcgaggtgcaca 47427885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 3671130 - 3671047
Alignment:
Q  5 agtggagaagcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||  || ||||||||||||||||||| ||||||||| || || ||||| || |||||||| ||||| ||| ||||||||    
T  3671130 agtggagagtcatagacttatttgtatttaattctgagtcagagacctttgtgatagagaggtgcaaagtcaagga-taaagtga 3671047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 47075402 - 47075466
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||| ||||| | ||| |||||||||| ||||||||| ||||| ||| ||||||||    
T  47075402 tttgtatttaatcttgagtgacggacctatgtgacaacgaggtgcagagtcaaggattaaagtga 47075466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 21195364 - 21195293
Alignment:
Q  136 tttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttcct 207  Q
    ||||||||||||| ||||||||||||| || |||||| || ||| ||| ||  ||||||||||| |||||||    
T  21195364 tttttaacttttaaaaagttgaattcaccacttttcatcactttccaacaagatatttctatttttgttcct 21195293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 36280358 - 36280401
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtga 58  Q
    ||||||||||||| |||||||||||||||||| || ||||||||    
T  36280358 cagagacttatttatatttaatcctgagtcagagacctatgtga 36280401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 49261585 - 49261620
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgaca 60  Q
    ||||||||||||||||||||||||| ||||||||||    
T  49261585 tttgtatttaatcctgagtcagggacctatgtgaca 49261620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 53957753 - 53957683
Alignment:
Q  18 agacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||| |||||||||||| | |||||| |||||||| |||| | ||| | ||||||||||    
T  53957753 agacttatttgtattta-tcctgagtcaggaacctatgtaacagcgagttgcagaatcaagtactaaagtga 53957683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 54143889 - 54143822
Alignment:
Q  139 ttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttcc 206  Q
    |||||||||| ||||||||||| | ||||||||| || ||||||| ||  ||||||||||| ||||||    
T  54143889 ttaacttttaaaaagttgaatttaccatttttcatcacttttcaataagatatttctatttttgttcc 54143822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 22455423 - 22455369
Alignment:
Q  141 aacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttct 195  Q
    |||||||||||||||||||| || ||||||||||| |||| || | |||||||||    
T  22455423 aacttttagaaagttgaatttaatatttttcaccactttttaatacattatttct 22455369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 34060850 - 34060804
Alignment:
Q  137 ttttaacttttagaaagttgaattcaacatttttcaccatttttcaa 183  Q
    |||||||||||| |||||| |||||| || |||||||||||||||||    
T  34060850 ttttaacttttaaaaagttaaattcatcacttttcaccatttttcaa 34060804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 48574504 - 48574534
Alignment:
Q  19 gacttatttgtatttaatcctgagtcaggga 49  Q
    |||||||||||||||||||||||||||||||    
T  48574504 gacttatttgtatttaatcctgagtcaggga 48574534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 28954253 - 28954302
Alignment:
Q  134 actttttaacttttagaaagttgaattcaacatttttcaccatttttcaa 183  Q
    |||||| |||||||||| |||||||||||||| ||| |||||||| ||||    
T  28954253 acttttaaacttttagacagttgaattcaacactttccaccatttatcaa 28954302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 53959146 - 53959187
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacag 61  Q
    |||||||||||||||||| |||||||| || |||||||||||    
T  53959146 acttatttgtatttaatcatgagtcagagacctatgtgacag 53959187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 51046728 - 51046657
Alignment:
Q  134 actttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  51046728 actttttgacttttaaaaagttgaattcaacacttttcaccatttttcaacaaattatttctatttatgttc 51046657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 7945595 - 7945661
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggac 81  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  7945595 cagagacttatttgtatttaatcctgagtcaggaacctatgtgacagcgaggtgcagagtcagggac 7945661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 32268033 - 32268102
Alignment:
Q  136 tttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||    
T  32268033 tttttgacttttagaaagttgaattcaacacttttcaccatttttcaacaaattatttttatttatgttc 32268102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 5782496 - 5782426
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaa 85  Q
    ||||||||| ||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||    
T  5782496 cagagacttctttgtatttaatcatgagtcagagacctatgtgacagcgaggtgcagagtcagggactaaa 5782426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 32665814 - 32665885
Alignment:
Q  18 agacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||| |||| | ||||||||||||||||    
T  32665814 agacttatttgtatttaatcatgagtcagagacctatgtgacagcgagctgcagaatcagggactaaagtga 32665885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 10333064 - 10332994
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||| ||||||||||||| ||| ||| |||||||||| ||||||||| ||||||||||||||||||    
T  10333064 gacttatttatatttaatcctgaatcaaggacctatgtgacaacgaggtgcaaagtcagggactaaagtga 10332994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 13925101 - 13925181
Alignment:
Q  124 ggaaattattactttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||  ||||||| ||||||||| ||||||||| |||| ||||||| ||||||||| |||||||||||||||||||||    
T  13925101 ggaaattacaactttttgacttttagatagttgaatt-aacacttttcactatttttcaacaaattatttctatttatgttc 13925181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 52440600 - 52440662
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcag 77  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||| ||||||    
T  52440600 cagagacttatttatatttaatcctgactcagggacctatgtgacagcgatgtgcaaagtcag 52440662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 52439560 - 52439487
Alignment:
Q  16 agagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||| |||||||||||||||| ||| || ||||||||||||||| |||| | |||||| |||||||||    
T  52439560 agagacttatctgtatttaatcctgagccagagacctatgtgacagcgagctgcagaatcaggggctaaagtga 52439487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 7944233 - 7944169
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggacta 83  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||||| |||| | ||||||||||    
T  7944233 gacttatttgtatttaattttgagtcagggacctatgtgacagcgagttgcaaaatcagggacta 7944169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 9339721 - 9339657
Alignment:
Q  22 ttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaag 86  Q
    |||||||||||||||||||||||||||| |||||| ||| |||| |||| | |||||||||||||    
T  9339721 ttatttgtatttaatcctgagtcagggacctatgtaacaacgagctgcagaatcagggactaaag 9339657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 9341066 - 9341109
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtga 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  9341066 cagagacttatttgtatttaatcctgagtcagggacctatgtga 9341109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 6612501 - 6612427
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||| ||||||||||||| |||||||| ||  | | | ||||||||||||| ||||||||||||||||||    
T  6612501 cagagacttgtttgtatttaatcatgagtcagagacatttataacagcgaggtgcagagtcagggactaaagtga 6612427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 22856761 - 22856688
Alignment:
Q  16 agagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||| ||||||||||||||||||||| | |||| ||| ||| || |||||| |||||| |||||||||||    
T  22856761 agagacttctttgtatttaatcctgagtcaagaatctttgtaacaacgtggtgcagagtcagtgactaaagtga 22856688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 12173221 - 12173173
Alignment:
Q  124 ggaaattattactttttaacttttagaaagttgaattcaacatttttca 172  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||||||    
T  12173221 ggaaattataactttttgacttttacaaagttgaattcaacatttttca 12173173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 1107462 - 1107399
Alignment:
Q  142 acttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    |||||||| ||||||||||||||| |||||||| ||| | || ||||||||| |||||||||||    
T  1107462 acttttaggaagttgaattcaacacttttcaccgtttattaacaaattatttttatttatgttc 1107399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 5783154 - 5783205
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgca 70  Q
    ||||| |||||||||||| |||||||  ||||||||||||||||||||||||    
T  5783154 gacttctttgtatttaattctgagtcgaggatctatgtgacagcgaggtgca 5783205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 10333227 - 10333282
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgca 70  Q
    ||||||||||||||||||||||| |||||||| || |||||| |||||||| ||||    
T  10333227 cagagacttatttgtatttaatcttgagtcagagacctatgtaacagcgagctgca 10333282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 46289705 - 46289632
Alignment:
Q  98 aaactaaaagtaataattttgcacccggaaattattactttttaacttttagaaagttgaattcaacatttttca 172  Q
    |||||||||||| || |||||||   ||||||||  ||||||||||||||| ||||| |||||||||||||||||    
T  46289705 aaactaaaagtagtagttttgcatt-ggaaattacaactttttaacttttaaaaagtcgaattcaacatttttca 46289632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 3894800 - 3894861
Alignment:
Q  144 ttttagaaagttgaattcaacatttttcaccatttttc-aagaaattatttctatttatgtt 204  Q
    ||||| |||| | ||||||||||||||||| ||||||| || ||||||||||||||||||||    
T  3894800 ttttaaaaagctaaattcaacatttttcactatttttctaacaaattatttctatttatgtt 3894861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 1001236 - 1001164
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagt 87  Q
    ||||||||  |||||||||||||| |||||| ||| || |||| || ||||||||| ||||| ||||||||||    
T  1001236 cagagactactttgtatttaatcccgagtcatggacctttgtggcaacgaggtgcaaagtcatggactaaagt 1001164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 6614020 - 6614051
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcag 46  Q
    ||||||||||||||||||||||||||||||||    
T  6614020 cagagacttatttgtatttaatcctgagtcag 6614051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 27210749 - 27210795
Alignment:
Q  136 tttttaacttttagaaagttgaattcaacatttttcaccatttttca 182  Q
    ||||||||||||| |||||| |||| | |||||||||||||||||||    
T  27210749 tttttaacttttaaaaagttaaattgatcatttttcaccatttttca 27210795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 41898940 - 41898878
Alignment:
Q  137 ttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctattt 199  Q
    |||||||||||| |||||| |||||| || |||| |||||||||||| | | |||||||||||    
T  41898940 ttttaacttttaaaaagttaaattcatcactttttaccatttttcaatacaatatttctattt 41898878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 8975227 - 8975167
Alignment:
Q  29 tatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||| ||||||||||| || ||||||| | ||||||| ||| |||||| |||||||    
T  8975227 tatttaatcttgagtcagggacctttgtgacaacaaggtgcaaagttagggaccaaagtga 8975167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 11060835 - 11060899
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||  ||||||| ||| || ||||||||||||||||| ||||| |||  |||||||    
T  11060835 tttgtatttaattttgagtcatggacctttgtgacagcgaggtgcatagtcaaggatcaaagtga 11060899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 30748081 - 30748007
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||    
T  30748081 cagagacttgtttgtatttaatcctaagtcagggacctatgtgacagcgaggtgcagaatcagggactaaagtga 30748007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 1947417 - 1947498
Alignment:
Q  124 ggaaattattactttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||  ||||||| ||||||||||||||||||| |||| |||| |||||||| ||| |||||||||||||||||||||    
T  1947417 ggaaattacaactttttgacttttagaaagttgaatttaacactttttaccattttccaacaaattatttctatttatgttc 1947498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 16441885 - 16441809
Alignment:
Q  125 gaaattattactttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttat 201  Q
    |||||||  ||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  16441885 gaaattacaacttttttacttttagaaatttgaattcaacatttttcaccacttttcaacaaattatttatatttat 16441809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 19646027 - 19646090
Alignment:
Q  142 acttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||| |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  19646027 acttttaaaaagttgaattcaacacttttcaccatttttcaacaaattttttctatttatgttc 19646090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 31219032 - 31218963
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||| ||||||||||||||||||| | ||| |||||||||||||||||||| |||||| || ||||||||    
T  31219032 acttctttgtatttaatcctgagttaaggacctatgtgacagcgaggtgcagagtcagagattaaagtga 31218963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 31219206 - 31219275
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||| ||||||||||||||||||| |  || |||||||||||||||||||| ||||||||| ||||||||    
T  31219206 acttctttgtatttaatcctgagttaatgacctatgtgacagcgaggtgcagagtcagggattaaagtga 31219275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 5138503 - 5138565
Alignment:
Q  142 acttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||||| |||||||||||||||||||  |||||| || ||| ||||| |||||||||||    
T  5138503 acttttagaaatttgaattcaacatttttca-tattttttaataaaatatttgtatttatgttc 5138565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 6468822 - 6468871
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcga 64  Q
    ||||||||  ||||||||||||| ||||||||||| || |||||||||||    
T  6468822 cagagactattttgtatttaatcatgagtcagggacctttgtgacagcga 6468871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 27127586 - 27127529
Alignment:
Q  142 acttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctattt 199  Q
    ||||||| |||||| |||||| ||||||||||||||| |||| | | |||||||||||    
T  27127586 acttttaaaaagttaaattcatcatttttcaccatttctcaatacaatatttctattt 27127529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 23508020 - 23507957
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||| ||||| | ||||||||||| |||||| | || ||| |||||||||||    
T  23508020 tttgtatttaatcctgaatcaggaacctatgtgacagggaggtgtagag-cagagactaaagtga 23507957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 24459487 - 24459561
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||| |||||||    
T  24459487 cagagacttatttgtatttaatcctgattcagggacctatgtgacagcgagatgcagagtcagggaccaaagtga 24459561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 31091572 - 31091642
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |||||||    
T  31091572 gacttatttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcagggaccaaagtga 31091642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 32766284 - 32766354
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |||||||    
T  32766284 gacttatttgtatttaatcctgagtcagggacctatgtgacaacgaggtgcagagtcagggaccaaagtga 32766354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 40000376 - 40000449
Alignment:
Q  16 agagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||| |||||||    
T  40000376 agagacttatttgtatttaatcctcaatcagggatctatgtaacagcgaggtgcagagtcagggaccaaagtga 40000449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 7888643 - 7888572
Alignment:
Q  134 actttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||| ||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7888643 acttttttacttttataaaattaaattcaacacttttcaccatttttcaagaaattatttctatttatgttc 7888572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 39015084 - 39015013
Alignment:
Q  18 agacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||||    
T  39015084 agacgtatttgtatttaatcctgagtcaaggatctatgtggcagcgaggtgcagagtcagggacaaaagtga 39015013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 2910182 - 2910108
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | |||  |||||||||||    
T  2910182 cagagacttatttgtatttaatcccgagtcagggatctatgtgacagcgagctgcaaaatcaaagactaaagtga 2910108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 17330271 - 17330342
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaag 86  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| | ||| |||||||||    
T  17330271 cagagacttatttgtatttaatcctgagtcagggacctatgtgacagtgagctgcagaatcaaggactaaag 17330342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 31090246 - 31090176
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaa 85  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||| | ||||||||||||    
T  31090246 cagagacttatttatatttaatcctgagtcaaggacctatgtgacagcgagctgcagaatcagggactaaa 31090176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 10824259 - 10824322
Alignment:
Q  142 acttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    |||||||||||||| ||||||||||||||||||| ||| ||| ||||||||| |||||||||||    
T  10824259 acttttagaaagttaaattcaacatttttcaccactttccaacaaattatttttatttatgttc 10824322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 24458142 - 24458068
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||| |||||||||||||||||  ||||||||||| |||||||| |||||| |||| | ||||||||||||||||    
T  24458142 cagaaacttatttgtatttaattttgagtcagggacctatgtgatagcgagctgcataatcagggactaaagtga 24458068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 34037717 - 34037788
Alignment:
Q  18 agacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||||||||| | ||| || | ||||||| ||||||| ||||| ||||||||||||    
T  34037717 agacttatttgtatttaatcctgagttatggacctttatgacagcaaggtgcagagtcaaggactaaagtga 34037788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 32765016 - 32764946
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||||||||||| || |||| ||||| | || |||| | ||||||||||||||||    
T  32765016 gacttatttgtatttaatcctgagtcagagacctatatgacaactagctgcagaatcagggactaaagtga 32764946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 803980 - 803919
Alignment:
Q  144 ttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||| |||||||||| | ||||||||| ||||||| ||||||||| |||||||||||    
T  803980 ttttagaaatttgaattcaatacttttcaccacttttcaacaaattatttttatttatgttc 803919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 17466869 - 17466930
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtca 76  Q
    ||||||||| |||||||||||||||||||||| |   ||||||||||||||||||| |||||    
T  17466869 cagagacttctttgtatttaatcctgagtcagcggcttatgtgacagcgaggtgcagagtca 17466930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 39016424 - 39016496
Alignment:
Q  19 gacttatttgtatttaatcctgagtc--agggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||  || ||| |||||||||||||| |||| | |||| |||||||||||    
T  39016424 gacttatttgtatttaatcctgagtcagagagatgtatgtgacagcgagctgcagaatcagagactaaagtga 39016496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 445602 - 445648
Alignment:
Q  134 actttttaacttttagaaagttgaattcaacatttttcaccattttt 180  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  445602 actttttgacttttaggaagttgaattcaacacttttcaccattttt 445648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 5915037 - 5915107
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| |||||||||||| ||||||||  || |||| ||| ||||||||||| ||||| ||||||||||||    
T  5915037 gacttctttgtatttaattctgagtcaaagacctatttgaaagcgaggtgcagagtcatggactaaagtga 5915107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 15442022 - 15442063
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgagg 66  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  15442022 tttgtatttaatcctgagtcaggaatctttgtgacagcgagg 15442063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 14704084 - 14704048
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatg 55  Q
    ||||||||||||||||||||||||||||||| |||||    
T  14704084 gacttatttgtatttaatcctgagtcagggacctatg 14704048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 14887555 - 14887626
Alignment:
Q  31 tttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga--atttactcaaa 100  Q
    ||||||||||||||||||| ||  |||||||||||||||| |||  ||||| |||||||  |||||||||||    
T  14887555 tttaatcctgagtcagggaccttcgtgacagcgaggtgcagagtttgggaccaaagtgaccatttactcaaa 14887626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 6975919 - 6975849
Alignment:
Q  134 actttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    |||||| ||||| |||| ||||||||||||||||||||||||  |||||| | ||||||| ||||| |||||    
T  6975919 acttttaaacttctagagagttgaattcaacatttttcacca-ctttcaacatattatttttatttttgttc 6975849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 21733812 - 21733889
Alignment:
Q  15 cagagacttatttgtatttaatc---ctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||||||    ||||||||||| || ||||||| ||| || || |||||||||||| |||||    
T  21733812 cagagacttatttgtatttaatcatgatgagtcagggacctttgtgacaacgatgtacaaagtcagggactagagtga 21733889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 33726405 - 33726451
Alignment:
Q  137 ttttaacttttagaaagttgaattcaacatttttcaccatttttcaa 183  Q
    ||||||||||||||||||| |||| |  |||||||||||||||||||    
T  33726405 ttttaacttttagaaagttaaatttattatttttcaccatttttcaa 33726451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 2239607 - 2239652
Alignment:
Q  137 ttttaacttttagaaagttgaattcaacatttttcaccatttttca 182  Q
    |||||||||||| |||||| |||||| ||||||| |||||||||||    
T  2239607 ttttaacttttaaaaagttaaattcatcattttttaccatttttca 2239652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 12746252 - 12746332
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga--atttactcaaacta 103  Q
    ||||||||||||||||||||||| | || |  ||| |||||||||| ||||| | || |||||||  ||||||||||||||    
T  12746252 tttgtatttaatcctgagtcaggaacctttaagactgcgaggtgcagagtcaagaaccaaagtgaccatttactcaaacta 12746332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 7073731 - 7073675
Alignment:
Q  5 agtggagaagcagagacttatttgtatttaatcctgagtcagggatctatgtgacag 61  Q
    |||| |||| |||||||||||||||||||||||| || |||| || ||||| |||||    
T  7073731 agtgcagaatcagagacttatttgtatttaatcccgaatcagagacctatgcgacag 7073675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 7412170 - 7412122
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggt 67  Q
    ||||| ||| ||||||||| |||||||| ||||||||||||| ||||||    
T  7412170 gacttctttatatttaatcttgagtcagagatctatgtgacaacgaggt 7412122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 34582721 - 34582785
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||| ||||||  || || ||| ||||| ||||||| ||||||||||||| ||||    
T  34582721 tttgtatttaatcccgagtcaatgacctttgtaacagcaaggtgcagagtcagggactaacgtga 34582785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 9093 - 9025
Alignment:
Q  136 tttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgtt 204  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  9093 tttttgacttttaaaaagttgaattcaacacttttcaccatttttcaacaaattatttctatttatgtt 9025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 28591162 - 28591229
Alignment:
Q  22 ttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||||||    
T  28591162 ttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcagggatcaaagtga 28591229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 8074529 - 8074459
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||||||||||||||  |||||||||||||| |||| | ||||||||||||||||    
T  8074529 gacttatttgtatttaatcctgagtcagggacttatgtgacagcgagctgcataatcagggactaaagtga 8074459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 25590522 - 25590451
Alignment:
Q  5 agtggagaagcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcag 77  Q
    |||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||    
T  25590522 agtgcagaatcagagacttatttgtatttaatcc-gagtcagggacctatgtgacagcgaggtgcagagtcag 25590451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 9538090 - 9538164
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||||| |||| |||| |||||||||| |||||||    
T  9538090 cagagacttctttgtatttaatcctgagtcagggacctatatgacaacgagatgcagagtcagggaccaaagtga 9538164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 13651173 - 13651234
Alignment:
Q  27 tgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||    
T  13651173 tgtatttaatcctgagtcagggacctatgtgacagc-aggtgcacagtcaaggactaaagtga 13651234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 18400268 - 18400198
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| ||| ||||||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||    
T  18400268 gacttctttttatttaatcctgagtcaaggacctatgtgacagtgaggtgcagagtcagggactaaagtga 18400198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 21069367 - 21069297
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||||||||||| || || ||||||| ||||||||| |||||| |||||||||||    
T  21069367 gacttatttgtatttaatcctgagtcagagacctctgtgacaacgaggtgcagagtcagagactaaagtga 21069297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 19183027 - 19182971
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtca 76  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  19183027 acttatttgtatttaatcctgagtcagagacctatgtgacagcgaggtgcaaagtca 19182971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 546081 - 546150
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||| |||| | || |||||||||||||    
T  546081 gacttatctgtatttaatcctgagtcagggacctatgtgacagcgagctgcaaaatc-gggactaaagtga 546150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 4592939 - 4592869
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||| | || | ||||||||||||||||    
T  4592939 gacttatttgtatttaatcttgagtcagggacttatgtgacagcgagctacataatcagggactaaagtga 4592869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 9537101 - 9537033
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagt 87  Q
    ||||| |||||||||||| || |||||| || |||||||||||||||||||| ||| ||||||||||||    
T  9537101 gacttctttgtatttaattctaagtcagagacctatgtgacagcgaggtgcagagtgagggactaaagt 9537033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 2464747 - 2464677
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||| ||||||| ||| |||| |||||||||| |||| | |||| |||||||||||    
T  2464747 gacttatttgtatttaatcatgagtcatggacctatatgacagcgagctgcagaatcagtgactaaagtga 2464677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 16611810 - 16611736
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| ||| |||||||||||||||||||||| || |||||||||||||||||| | ||||| | | ||||||||    
T  16611810 cagaggcttctttgtatttaatcctgagtcagagacctatgtgacagcgaggtgtagagtcaagaattaaagtga 16611736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 40612712 - 40612774
Alignment:
Q  27 tgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||||    
T  40612712 tgtatttaatcctgagtcagggacctacgtgacagtgagctgcaaaatcagggactaaagtga 40612774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 8075864 - 8075935
Alignment:
Q  5 agtggagaagcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtca 76  Q
    |||| |||| |||| |||| ||||||||||||| ||| |||||||||||| | ||||||||||||| |||||    
T  8075864 agtgcagaatcagatacttttttgtatttaatcttgaatcagggatctatctaacagcgaggtgcagagtca 8075935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 14891199 - 14891258
Alignment:
Q  30 atttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||| |||||||| || |||||||||||||||||||| ||| |||||| |||||||    
T  14891199 atttaatcatgagtcagagacctatgtgacagcgaggtgcagagtgagggaccaaagtga 14891258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 28782706 - 28782773
Alignment:
Q  134 actttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttat 201  Q
    ||||||| ||||||| || ||||||||||||| |||| || |||||| || |||||||||||||||||    
T  28782706 acttttttacttttaaaatgttgaattcaacactttttacaattttttaacaaattatttctatttat 28782773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 2466819 - 2466889
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||| ||||||||||||| |||  || |||||||| ||||||||||| |||||| ||| |||||||    
T  2466819 gacttatttttatttaatcctgaatcaatgacctatgtgatagcgaggtgcagagtcagagaccaaagtga 2466889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 4594144 - 4594176
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatc 51  Q
    |||||||||||||||||||||||||||||||||    
T  4594144 gacttatttgtatttaatcctgagtcagggatc 4594176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 10317259 - 10317315
Alignment:
Q  149 gaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||||||||||| |||||| |||||||||| | ||| ||||||||| |||||    
T  10317259 gaaagttgaattcaacacttttcatcatttttcaacacattctttctatttttgttc 10317315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 19186261 - 19186305
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgac 59  Q
    ||||||||| ||||||||||||||| ||||||||| |||||||||    
T  19186261 cagagacttgtttgtatttaatcctaagtcagggacctatgtgac 19186305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 544726 - 544668
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagg 78  Q
    |||||||||||||||||||||||||||| || |||| ||||| ||| ||||| |||||||    
T  544726 gacttatttgtatttaatcctgagtcagagacctatctgaca-cgaagtgcagagtcagg 544668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 32640366 - 32640315
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgca 70  Q
    ||||||||||||||||||||||||| | ||  ||||||||||| ||||||||    
T  32640366 gacttatttgtatttaatcctgagttatggtcctatgtgacagtgaggtgca 32640315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 16979070 - 16979000
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||| ||||||| ||||||||  || || |||| |||| ||||||| ||||| ||||||||||||    
T  16979070 gacttatttgcatttaattctgagtcaatgacctttgtggcagcaaggtgcaaagtcaaggactaaagtga 16979000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 24900410 - 24900447
Alignment:
Q  52 tatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  24900410 tatgtgacagcgaggtgcagagtcagggaccaaagtga 24900447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 31844800 - 31844730
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||||||||||    
T  31844800 gacttgtttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagctagggactaaagtga 31844730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 53771100 - 53771164
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  53771100 tttgtatttaattctgagtcagggacctatgtgacaacgaggtgcagagtcagggactaaagtga 53771164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 45674248 - 45674181
Alignment:
Q  134 actttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttat 201  Q
    ||||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||    
T  45674248 actttttaactttaagaaagttgaattcaacacttttcactatttttcaacaaattaattctatttat 45674181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 47874656 - 47874559
Alignment:
Q  5 agtggagaagcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga--atttactcaaa 100  Q
    |||| |||| ||| ||||||||||||||||||| ||||||||||| |||||||| |||||| |||| | |||| |||||||||||  |||||||||||    
T  47874656 agtgcagaatcagggacttatttgtatttaatcttgagtcagggacctatgtgatagcgagctgcagaatcagagactaaagtgactatttactcaaa 47874559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 47878529 - 47878599
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||||||| |||||||||  |||||||    
T  47878529 gacttatttgtatttaatccagagtcagggacctatgtaacagcgaggtgcagagtcagggatcaaagtga 47878599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 4867866 - 4867785
Alignment:
Q  124 ggaaattattactttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||  ||||||| ||||||| ||| |||||||||||| ||||||||| ||||||| ||||||||| |||||||||||    
T  4867866 ggaaattacaactttttgacttttaaaaatttgaattcaacacttttcaccacttttcaacaaattatttttatttatgttc 4867785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 42278126 - 42278057
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||| |||||||||| |||||||||||| || |||| | ||| ||||||||||||    
T  42278126 acttatttgtatttaatcccgagtcagggacctatgtgacagcaagctgcagaatcaaggactaaagtga 42278057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 42391933 - 42392016
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga--atttactcaaa 100  Q
    |||| |||||||||||||| |||||||| || ||||||||||| |||||||  |||||| |||||||||||  |||||||||||    
T  42391933 gactaatttgtatttaatcatgagtcagagacctatgtgacagtgaggtgcggagtcagagactaaagtgatcatttactcaaa 42392016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 53770412 - 53770341
Alignment:
Q  18 agacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||| |||||||||||| |||||||||| | ||||||||  |||||||||| |||||| |||||||||||    
T  53770412 agacttctttgtatttaattctgagtcaggaacctatgtgaatgcgaggtgcagagtcagagactaaagtga 53770341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 54574502 - 54574452
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgca 70  Q
    ||||||||||||||||||||||||||| || ||||||||||||||| ||||    
T  54574502 acttatttgtatttaatcctgagtcagagacctatgtgacagcgagatgca 54574452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 45683989 - 45684046
Alignment:
Q  134 actttttaacttttagaaagttgaattcaacatttttcaccatttttcaagaaattat 191  Q
    ||||||||||||||| ||| |||||||||||| ||||||||| ||||||| |||||||    
T  45683989 actttttaacttttataaatttgaattcaacacttttcaccacttttcaacaaattat 45684046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 4703261 - 4703332
Alignment:
Q  18 agacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||| |||||||||||| |||||| ||||| ||||||||||||||| || | ||||||  ||||||||||    
T  4703261 agacttctttgtatttaattctgagttagggacctatgtgacagcgagatgtagagtcagtaactaaagtga 4703332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 39868999 - 39868932
Alignment:
Q  20 acttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagt 87  Q
    |||| ||||||||||||  ||||||||||| || ||| ||||||||||||| |||||| |||||||||    
T  39868999 acttgtttgtatttaattatgagtcagggacctttgtaacagcgaggtgcagagtcagagactaaagt 39868932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 19051272 - 19051346
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||| |||||||||||||  ||||||| || || |||| || ||||||| | ||||||||||||||||||    
T  19051272 cagagacttctttgtatttaatctcgagtcagtgacctttgtgccaacgaggtgtagagtcagggactaaagtga 19051346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 26172983 - 26173057
Alignment:
Q  15 cagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||| ||||||| ||| || | ||||||  ||||||| |||  |||||||||||||    
T  26172983 cagagacttatttgtatttaatcttgagtcaaggacctttctgacagtaaggtgcatagttggggactaaagtga 26173057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 48740065 - 48740135
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||| ||||||||||||  ||||||||||||||| ||||||  |||||||| || || ||||||||||||    
T  48740065 gacttctttgtatttaattatgagtcagggatctacgtgacaatgaggtgcagagacatggactaaagtga 48740135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 26685488 - 26685528
Alignment:
Q  45 agggatctatgtgacagcgaggtgcacagtcagggactaaa 85  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  26685488 agggacctatgtgacagcgaggtgcagagtcagggactaaa 26685528  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 35911151 - 35911224
Alignment:
Q  98 aaactaaaagtaataattttgcacccggaaattattactttttaacttttagaaagttgaattcaacatttttca 172  Q
    |||||||||||| ||||||||||   | ||||||| ||||||| ||||||| ||| |||||||||||| ||||||    
T  35911151 aaactaaaagtagtaattttgcatt-gaaaattataactttttgacttttaaaaatttgaattcaacacttttca 35911224  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 44158582 - 44158516
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaa 85  Q
    ||||| ||||||||||||||||||||||| | || ||| ||| ||||||||| |||| ||| |||||    
T  44158582 gacttctttgtatttaatcctgagtcaggaacctctgtaacaacgaggtgcagagtcgggggctaaa 44158516  T

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Target: scaffold0034 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 116133 - 116063
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||| | | ||| ||||||||||    
T  116133 gacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaatgaggaactaaagtga 116063  T

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Target: scaffold0209 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 29349 - 29411
Alignment:
Q  142 acttttagaaagttgaattcaacatttttcaccatttttcaagaaattatttctatttatgttc 205  Q
    ||||||||||||||||||| ||||||| ||||||||||| || ||||||||| |||||||||||    
T  29349 acttttagaaagttgaatt-aacatttctcaccattttttaacaaattatttttatttatgttc 29411  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 74358 - 74424
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaa 85  Q
    ||||| ||||||||||||| ||||| ||||| ||||||||||| ||| |||| ||||||||||||||    
T  74358 gacttctttgtatttaatcatgagttagggacctatgtgacagtgagttgcagagtcagggactaaa 74424  T

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Target: scaffold0039; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 79151 - 79085
Alignment:
Q  19 gacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaa 85  Q
    ||||| ||| ||||||||| ||||||| ||| |||||||||||||||||||| ||||||| ||||||    
T  79151 gacttctttttatttaatcatgagtcaaggacctatgtgacagcgaggtgcagagtcaggaactaaa 79085  T

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Target: scaffold0039; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 79727 - 79798
Alignment:
Q  18 agacttatttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtga 89  Q
    |||||| ||||||||||||| ||||||||| |  ||||| ||| ||||||||  ||||||||| ||||||||    
T  79727 agacttctttgtatttaatcatgagtcaggaacttatgtaacaacgaggtgccgagtcagggattaaagtga 79798  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 36574 - 36650
Alignment:
Q  25 tttgtatttaatcctgagtcagggatctatgtgacagcgaggtgcacagtcagggactaaagtg--aatttactcaaa 100  Q
    |||||||||||||| |||| || || || ||||||| |||||||||  ||||||||||||||||  ||||||||||||    
T  36574 tttgtatttaatcccgagttagagacctttgtgaca-cgaggtgcagggtcagggactaaagtgacaatttactcaaa 36650  T

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