View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8252_low_16 (Length: 209)
Name: NF8252_low_16
Description: NF8252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8252_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 29711106 - 29710926
Alignment:
| Q |
14 |
attattcttggacagtgtttgtttaggaggttcaaactgggctaataaatcatgttaaa---aataacaccataccttttaattctttattttgatttaa |
110 |
Q |
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| T |
29711106 |
attattcttggacagtgtttgtttaggaggttcaaactgggctaataaatcatgttaaatacaataacaccataccttttaattctttattttgatttaa |
29711007 |
T |
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| Q |
111 |
ttgcacaagtggtaacaattttcggaatctcatctggcatattctgtcattgttttattgtggttgtaagtatgtaactac |
191 |
Q |
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| T |
29711006 |
ttgcacaagtggtaacaattttctgaatctcatctggcatattctgtcgttgttttattgtggttgtaagtatgtaactac |
29710926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 29692611 - 29692734
Alignment:
| Q |
14 |
attattcttggacagtgtttgtttaggaggttcaaactgggctaataaatcatgttaa----------aaataacaccataccttttaattctttatttt |
103 |
Q |
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| T |
29692611 |
attattcttggacaatgtttgtttaggtggttcaaactgggctaatcagtcatgttaatcacaataacaattaacaacataccttttaattctttatttt |
29692710 |
T |
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| Q |
104 |
gatttaattgcacaagtggtaaca |
127 |
Q |
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| T |
29692711 |
gatttaattgtacaagtggtaaca |
29692734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 29698612 - 29698780
Alignment:
| Q |
14 |
attattcttggacagtgtttgtttaggaggttcaaactgggctaataaatcatgttaaa---aataacaccataccttttaattctttattttgatttaa |
110 |
Q |
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|||||||||| ||||| |||||||| |||| | |||| |||||||| |||| ||||||| ||||||| |||||||||||||||||||||| |||||| |
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| T |
29698612 |
attattcttgaacagtctttgtttacgagggtgaaaccgggctaatcaatcttgttaaatacaataacatcataccttttaattctttatttatatttaa |
29698711 |
T |
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| Q |
111 |
-ttgcacaagtggtaacaattttcggaatctcatctggcatattctgtcattgttttattgtggttgtaa |
179 |
Q |
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| T |
29698712 |
tttgtccaagtggt-acaattttctgaatctcatctagcataacatgtcatagttttactatggttgtaa |
29698780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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