View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8252_low_3 (Length: 447)
Name: NF8252_low_3
Description: NF8252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8252_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 30 - 429
Target Start/End: Original strand, 41280457 - 41280858
Alignment:
| Q |
30 |
gtgtgtgtatttagaggaataatacaaacattaatataatataaacaatttcatagcatggacatatgagcatnnnnnnn--gtgtaattaatgtctcta |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41280457 |
gtgtgtgtatttagaggaataatacaaacattaatataatataaacaatttcatagcatggacatatgagcataaaaaaaaagtgtaattaatgtctcta |
41280556 |
T |
|
| Q |
128 |
aacatagcaagaaagaaaatgataaaattacctggtagcaagcaaaacgagggtaaggaagaagcaatgcaagcacacaagcaattacacctaaagcagt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41280557 |
aacatagcaagaaagaaaatgataaaattacctggtagcaagcaaaacgagggtaaggaagaagcaatgcaagcacacaagcaattacacctaaagcagt |
41280656 |
T |
|
| Q |
228 |
actagcagccaaatgaataggatgcataataggatcaatatgagcaccattagaataagccaacacatacaccaacacaatctgacccaatgaaattctc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41280657 |
actagcagccaaatgaataggatgcataataggatcaatatgagcaccattagaataagccaacacatacaccaacacaatctgacccaatgaaattctc |
41280756 |
T |
|
| Q |
328 |
ttagctatcaaatgtgttgattgagaaggtaaaaccacaacaaatgcagccaatgccaccgcaatagaagcagttcctttagagaaatgatttggaccta |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41280757 |
ttagctatcaaatgtgttgattgagaaggtaaaaccacaacaaatgcagccaatgccacagcaatagaagcagttcctttagagaaatgatttggaccta |
41280856 |
T |
|
| Q |
428 |
ta |
429 |
Q |
| |
|
|| |
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|
| T |
41280857 |
ta |
41280858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 38806483 - 38806444
Alignment:
| Q |
207 |
agcaattacacctaaagcagtactagcagccaaatgaata |
246 |
Q |
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| T |
38806483 |
agcaattacacataaagcagtactagctgccaaatgaata |
38806444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 34981782 - 34981887
Alignment:
| Q |
113 |
taattaatgtctctaaacatagcaagaaagaaaatgataaaattacctggtagcaagcaaaacgagggtaaggaagaagcaatgcaagcacacaagcaat |
212 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||| |
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| T |
34981782 |
taattaatgtctcgaaacatagcatgaaagaaaatgataaaattacctggtagcaagcaaaaggagggcaaggaaga---aatgcaaccacacaagcaat |
34981878 |
T |
|
| Q |
213 |
tacacctaa |
221 |
Q |
| |
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||||||||| |
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|
| T |
34981879 |
tacacctaa |
34981887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 34981660 - 34981612
Alignment:
| Q |
203 |
cacaagcaattacacctaaagcagtactagcagccaaatgaataggatg |
251 |
Q |
| |
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||||||||||||||| ||||| ||||||||| |||||||||||| |||| |
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|
| T |
34981660 |
cacaagcaattacacataaaggagtactagctgccaaatgaataagatg |
34981612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 54185258 - 54185219
Alignment:
| Q |
207 |
agcaattacacctaaagcagtactagcagccaaatgaata |
246 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
54185258 |
agcaattacacataaagcagtactagctgccaaatgaata |
54185219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 46636708 - 46636669
Alignment:
| Q |
207 |
agcaattacacctaaagcagtactagcagccaaatgaata |
246 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
46636708 |
agcaattacacataaagcagtactagctgccaaatgaata |
46636669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 43514794 - 43514833
Alignment:
| Q |
207 |
agcaattacacctaaagcagtactagcagccaaatgaata |
246 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
43514794 |
agcaattacacataaagcagtactagctgccaaatgaata |
43514833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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