View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8252_low_6 (Length: 347)
Name: NF8252_low_6
Description: NF8252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8252_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 11697707 - 11697389
Alignment:
| Q |
18 |
aatttccctttcatagatcatggaaatgtatttagtgtaagtatgacagtcactacacatcctaagatttcttgttattattaaaggagaaccctcagat |
117 |
Q |
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| T |
11697707 |
aatttccctttcatagatcatggaaatatatttagtgtaagtatgacagtcactacacatcctaagatttcttgttattcttaaaggagaaccctcagat |
11697608 |
T |
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| Q |
118 |
gtatgtatgagtccaaaagcaattgctaacttctgactatgaaatttcaatctctctttcttttcttcatcgtctacatcgagcaaaacttgtgatgtat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11697607 |
gtatgtatgagtccaaaagcaattgctaacttctgactatgaaatttcaatctctctttcttttcttcatcgtctacatcgagcaaaacttgtgatgtat |
11697508 |
T |
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| Q |
218 |
ctggtatgtacccttcaaatttcaactgccattccatttggtgaatcatctcatagattatgttccattgaggtatagacttgtcttgtgaaacaaactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11697507 |
ctggtatgtacccttcaaatttcaactgccattccatttggtgaatcatctcatagattatgttccattgaggtatagacttgtcttgtgaaacaaactt |
11697408 |
T |
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| Q |
318 |
gtacactttcctctctgct |
336 |
Q |
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|||||||||||||| |||| |
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| T |
11697407 |
gtacactttcctctttgct |
11697389 |
T |
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