View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8252_low_9 (Length: 267)
Name: NF8252_low_9
Description: NF8252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8252_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 42225441 - 42225209
Alignment:
| Q |
20 |
aaagaaacaaataagatatttccaaagttataagacaaaaatgtgtcacgttccaacatggataatactaacaaaaatgttatgagtattttgagagaga |
119 |
Q |
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| T |
42225441 |
aaagaaacaaataagatatttccaaagttataagacaaaaatgtgtcacgttccaacatggataatactaacaaaaatgttatgagtattttgagagaga |
42225342 |
T |
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| Q |
120 |
g--aaaagcatattgacctacaattatgtttttgt-----nnnnnnnnnnnnnnnnccatataattatgttcactgaaataccatttcatcattatattt |
212 |
Q |
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| T |
42225341 |
gaaaaaagcatattgacctacaattatgtttttgtataaaaagaaaaaaagaaaaaccatataattatgttcactgaaataccatttcatca------tt |
42225248 |
T |
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| Q |
213 |
atatataccagttgatgaacatatgatggtggggttcat |
251 |
Q |
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| T |
42225247 |
atatataccagttgatgaacatatgatggtggggttcat |
42225209 |
T |
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