View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_high_16 (Length: 330)
Name: NF8253_high_16
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 313
Target Start/End: Original strand, 11861502 - 11861805
Alignment:
| Q |
10 |
aaataagtgggagggattgaaaaaccttcgttctctttcagtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttg |
109 |
Q |
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|||| |||||||||| |||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||| |
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| T |
11861502 |
aaatgagtgggagggtctgaaaaaccttcgttctcttacattaaggagtattccaaaacttaagtcccttccatggggagttgaaaatgtgaacactttg |
11861601 |
T |
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| Q |
110 |
aaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaa |
209 |
Q |
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| T |
11861602 |
aaagacttaaggatttatgattgtcatggtttaacttttttaccagaaagtataggtaacctcacttcacttgaaaaactggttctttctgaatgcagaa |
11861701 |
T |
|
| Q |
210 |
agttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacac |
309 |
Q |
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| T |
11861702 |
agttagattctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacac |
11861801 |
T |
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| Q |
310 |
aggt |
313 |
Q |
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|||| |
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| T |
11861802 |
aggt |
11861805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 11829410 - 11829706
Alignment:
| Q |
17 |
tgggagggattgaaaaaccttcgttctctttcagtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagact |
116 |
Q |
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| T |
11829410 |
tgggagggtctgaaaaaccttcaatctcttacattaaggagtattccaaaactgaagtcccttccatggggagttgaaaacgtgaaaactttgaaagact |
11829509 |
T |
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| Q |
117 |
taaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttagg |
216 |
Q |
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| T |
11829510 |
tgaggatttatgattgtcatggtttaacttctttaccagaaagtataggtaacctcacttcacttgaaagactggttctttctgaatgcagaaatttaga |
11829609 |
T |
|
| Q |
217 |
ttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacacaggt |
313 |
Q |
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|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11829610 |
ttctcttcccaaaggaatggaaatgcttcagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacacaggt |
11829706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 10 - 309
Target Start/End: Original strand, 12040297 - 12040596
Alignment:
| Q |
10 |
aaataagtgggagggattgaaaaaccttcgttctctttcagtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttg |
109 |
Q |
| |
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|||| |||||||||| ||| |||||||||||||||| || |||||||||||||||| || ||||||||||| |||| || | ||||| |||| |
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| T |
12040297 |
aaatgagtgggagggtctgataaaccttcgttctcttacattaaggagtattccaaatctcaagtcccttcctcagggattcgagattgtgaactcttta |
12040396 |
T |
|
| Q |
110 |
aaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaa |
209 |
Q |
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||| ||||||| ||||||||||||| |||||||||||| | || ||||| ||| | ||| | ||||||||||||||||||||||||| |||||||||| |
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| T |
12040397 |
caagtcttaaggctttatgattgccagggtttaacttctctcccggaaagcatatgcaacttcgcttcacttgaaaaactggttctttcggaatgcagaa |
12040496 |
T |
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| Q |
210 |
agttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacac |
309 |
Q |
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|||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |
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| T |
12040497 |
agttagattctctgcccaaaggaatggaaacgctacagtctctaaagactttgattattagggactgcccgttgttattgccaaggtgtcaaccagacac |
12040596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 35 - 313
Target Start/End: Complemental strand, 11900991 - 11900713
Alignment:
| Q |
35 |
cttcgttctctttcagtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgcc |
134 |
Q |
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|||||||||||| || ||||||||||||| ||||| |||||||||||| ||| | ||||||| |||| ||||| | || |||||| |||||||||||| |
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| T |
11900991 |
cttcgttctcttacattaaggagtattcccaaactcaagtcccttccaagggaaattgaaaacttgaactctttgcatgatttaaggctttatgattgcc |
11900892 |
T |
|
| Q |
135 |
atggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaat |
234 |
Q |
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| T |
11900891 |
atggtctaactgacctaacagaaagcataggtaacctcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctgcccaaggggat |
11900792 |
T |
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| Q |
235 |
ggaaaagcttgagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacacaggt |
313 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11900791 |
ggaaatgctacagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaacccgacacaggt |
11900713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 303
Target Start/End: Original strand, 11733233 - 11733485
Alignment:
| Q |
51 |
taaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttcttt |
150 |
Q |
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||||||||||||||||||| | ||||| || | ||| || |||| ||||| | |||||||| ||||||||||||||||||| | |||||||| ||| |
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| T |
11733233 |
taaggagtattccaaaactagtgacccttacacgcggatttggaaacttgaaatcattgaaagatttaaggatttatgattgccctagtttaactcattt |
11733332 |
T |
|
| Q |
151 |
accagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtct |
250 |
Q |
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| T |
11733333 |
accagaaaccatagacaatctcacttcacttcgtgaactggttctttctgaatgcagaagtatggattctctgcccaaaggaatgataaagctcacgtca |
11733432 |
T |
|
| Q |
251 |
ctaaatactttgattattatggattgccctttgttattgccaaggtgtcaacc |
303 |
Q |
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||| ||| ||||| |||||||| ||||| ||||||||||||||||||||||| |
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| T |
11733433 |
ctatttaccttgatcattatggactgccccttgttattgccaaggtgtcaacc |
11733485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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