View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8253_high_20 (Length: 289)
Name: NF8253_high_20
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_high_20 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 5231343 - 5231074
Alignment:
| Q |
20 |
ccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttttcaaatggctccattttggttcatttg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231343 |
ccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttttcaaatggctccattttggttcatttg |
5231244 |
T |
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| Q |
120 |
gaagtcctaatattttgaaaggcgttaaaaattttctaattgttaggttgtaactcaaaccatgaaacaatttaaaccttactgcataccatattcatca |
219 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231243 |
gaagtcctaatattttgaaaggcgttaaaatttttctaattgttaggttataactcaaaccatgaaacaatttaaaccttactgcataccatattcatca |
5231144 |
T |
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| Q |
220 |
ataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctc |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5231143 |
ataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttctaccaaaattagttcctc |
5231074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 7346105 - 7346067
Alignment:
| Q |
207 |
accatattcatcaataggagcatcataatcatagcttgt |
245 |
Q |
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| T |
7346105 |
accatattcatcaattggagcatcatagtcatagcttgt |
7346067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 17126716 - 17126630
Alignment:
| Q |
203 |
gcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctc |
289 |
Q |
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| T |
17126716 |
gcataccatattcatcgataggagcatcataatcgtaactcgtggcaatgaaaaggccagaagatgttcttccaaaattagttcctc |
17126630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 42988695 - 42988778
Alignment:
| Q |
206 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctc |
289 |
Q |
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| T |
42988695 |
taccatattcatcaagaggtgcatcatagtcatagcttgtagcaatgaaaggaccaccagctgttctaccaaaatttgttcctc |
42988778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 17126893 - 17126793
Alignment:
| Q |
32 |
actgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttttcaaatggctccattttggttcatttggaagtcctaata |
131 |
Q |
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||||| ||||| ||||| | ||||||| ||| ||||| ||||||||||||||||||| | | | ||| | ||||||||||||| || ||||||| ||| |
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| T |
17126893 |
actgtcggatcaacagacactaaagctgactcgcattgctttattgctttatgtaaatctcttagatgcccccattttggttcacttataagtcctgata |
17126794 |
T |
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| Q |
132 |
t |
132 |
Q |
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| T |
17126793 |
t |
17126793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 5452968 - 5452885
Alignment:
| Q |
204 |
cataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcc |
287 |
Q |
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|||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||| || |||| |||||||| ||||| |
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| T |
5452968 |
cataccgtattcatcaagaggtgcatcataatcatagcttgtggcaataaaaggaccaccagcggttcttccaaaatttgttcc |
5452885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 52647440 - 52647401
Alignment:
| Q |
206 |
taccatattcatcaataggagcatcataatcatagcttgt |
245 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||| |
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| T |
52647440 |
taccatattcatcaattggagcatcatagtcatagcttgt |
52647401 |
T |
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