View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8253_high_21 (Length: 287)

Name: NF8253_high_21
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8253_high_21
NF8253_high_21
[»] chr2 (2 HSPs)
chr2 (116-273)||(25475767-25475924)
chr2 (18-116)||(17870402-17870501)
[»] scaffold0082 (1 HSPs)
scaffold0082 (26-68)||(57347-57389)
[»] chr3 (3 HSPs)
chr3 (29-68)||(25283880-25283919)
chr3 (131-167)||(50057894-50057930)
chr3 (117-167)||(28095490-28095540)
[»] scaffold0024 (1 HSPs)
scaffold0024 (26-68)||(53710-53752)
[»] chr5 (1 HSPs)
chr5 (215-260)||(1673846-1673891)
[»] chr8 (1 HSPs)
chr8 (130-166)||(1424709-1424745)
[»] chr7 (1 HSPs)
chr7 (117-160)||(3006879-3006922)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 116 - 273
Target Start/End: Original strand, 25475767 - 25475924
Alignment:
Q  116 gaagtgtgtggcttagggtgtcatgtggtcagtggctccagaatctagtatctagtaatagttatacgatttatctaaagaatttaatctagtaatgctt 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25475767 gaagtgtgtggcttacggtgtcatgtggtcagtggctccagaatctagtatctagtaatagttatacgatttatctaaagaatttaatctagtaatgctt 25475866  T
Q  216 atgccatagatgtacatgttggtttatccaattcctgaagaaaagttctcacctagtt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25475867 atgccatagatgtacatgttggtttatccaattcctgaagaaaagttctcacctagtt 25475924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 17870402 - 17870501
Alignment:
Q  18 agttatcacggacgagccacatgcagggaaacttacacgtgtggttctgg-cgggctctcctgaggtatctaataaccttgcttctgctcgccgctggcg 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17870402 agttatcacggacgagccacatgcagggaaacttgcacgtgtggttctggccgggctttcctgaggtatctaataaccttgcttctgctcgccgctggcg 17870501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0082 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 57389 - 57347
Alignment:
Q  26 cggacgagccacatgcagggaaacttacacgtgtggttctggc 68  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  57389 cggacgagccacatgcagggaaacttgcacgtgtggttctggc 57347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 25283919 - 25283880
Alignment:
Q  29 acgagccacatgcagggaaacttacacgtgtggttctggc 68  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  25283919 acgagccacatgcagggaaacttgcacgtgtggttctggc 25283880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 50057930 - 50057894
Alignment:
Q  131 gggtgtcatgtggtcagtggctccagaatctagtatc 167  Q
    |||||||||||||| ||||||||||||||||||||||    
T  50057930 gggtgtcatgtggttagtggctccagaatctagtatc 50057894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 28095490 - 28095540
Alignment:
Q  117 aagtgtgtggcttagggtgtcatgtggtcagtggctccagaatctagtatc 167  Q
    |||||||||| | ||||||||||||| || |||||||||||||||| ||||    
T  28095490 aagtgtgtgggtaagggtgtcatgtgctcggtggctccagaatctaatatc 28095540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 53710 - 53752
Alignment:
Q  26 cggacgagccacatgcagggaaacttacacgtgtggttctggc 68  Q
    ||||||||||||||| |||||||||| ||||||||||||||||    
T  53710 cggacgagccacatgaagggaaacttgcacgtgtggttctggc 53752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 1673846 - 1673891
Alignment:
Q  215 tatgccatagatgtacatgttggtttatccaattcctgaagaaaag 260  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||    
T  1673846 tatgccaaagacgtacatgttggtttatccaattccttaagaaaag 1673891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 1424745 - 1424709
Alignment:
Q  130 agggtgtcatgtggtcagtggctccagaatctagtat 166  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1424745 agggtgtcatgtggtcagtggctccagaatccagtat 1424709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 3006922 - 3006879
Alignment:
Q  117 aagtgtgtggcttagggtgtcatgtggtcagtggctccagaatc 160  Q
    |||||||||| | | |||||||||||||||||||||||||||||    
T  3006922 aagtgtgtgggtaaaggtgtcatgtggtcagtggctccagaatc 3006879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University