View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8253_high_24 (Length: 273)
Name: NF8253_high_24
Description: NF8253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8253_high_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 40556640 - 40556398
Alignment:
| Q |
18 |
attattttgtcaaaaccttcattgcatccacaaacaacgtcctcatgattcttctttgatcgcttacttcttttttccttcactgtaactttcttaaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40556640 |
attattttgtcaaaaccttcattgcatccacaaacaacatcctcatgattcttctttgatcggttacttcttttttccttcactgtaactttcttaaaat |
40556541 |
T |
|
| Q |
118 |
catcgttgcattccgaatcagcagcatagtactcctggttatttgaccgaagaatatgagaaacatcatctttgaattgattagctaagaacttagatcg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40556540 |
catcgttgcattccgaatcagcagcatagtactcccggttatttgaccgaagaatataagaaacatcatttttgaattgattagctaagaacttagatcg |
40556441 |
T |
|
| Q |
218 |
caaacataataaattttccatcatccgataatcatcaccacca |
260 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
40556440 |
caaacttagtaaattttccatcatccgataatcatcaccacca |
40556398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University